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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC46A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
79.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
67.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
66.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
56.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
55.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
52.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
51.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
50.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
50.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
49.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
49.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
48.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
46.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
45.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
42.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
42.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
40.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
39.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
39.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
37.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
29.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
29.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
27.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
26.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
25.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
23.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
15.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC46A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.8
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
35.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
277
Tumor
0.9
743
Tumor
0.9
641
Tumor
0.9
695
Tumor
0.8
314
Normal
0.8
867
Tumor
0.8
863
Tumor
0.8
685
Tumor
0.8
428
Normal
0.7
741
Tumor
0.7
343
Tumor
0.7
413
Tumor
0.7
517
Tumor
0.7
671
Tumor
0.6
424
Normal
0.6
1025
Tumor
0.6
421
Tumor
0.6
342
Normal
0.6
353
Tumor
0.6
127
Tumor
0.5
721
Tumor
0.5
271
Tumor
0.5
471
Tumor
0.5
977
Tumor
0.5
425
Tumor
0.5
823
Tumor
0.5
635
Tumor
0.5
361
Tumor
0.5
617
Tumor
0.4
647
Tumor
0.4
744
Normal
0.4
268
Normal
0.4
357
Tumor
0.4
147
Tumor
0.4
573
Tumor
0.4
951
Tumor
0.4
145
Tumor
0.4
627
Tumor
0.4
571
Tumor
0.4
341
Tumor
0.4
746
Normal
0.4
817
Tumor
0.4
221
Tumor
0.4
213
Tumor
0.4
258
Normal
0.4
344
Normal
0.4
862
Normal
0.4
231
Tumor
0.4
185
Tumor
0.4
172
Normal
0.4
272
Normal
0.4
636
Normal
0.3
391
Tumor
0.3
358
Normal
0.3
135
Tumor
0.3
724
Normal
0.3
465
Tumor
0.3
332
Normal
0.3
436
Normal
0.3
262
Normal
0.3
298
Normal
0.3
1013
Tumor
0.3
563
Tumor
0.3
311
Tumor
0.3
354
Normal
0.3
218
Normal
0.3
232
Normal
0.3
883
Tumor
0.3
445
Tumor
0.3
513
Tumor
0.3
286
Normal
0.3
663
Tumor
0.3
443
Tumor
0.3
132
Normal
0.3
868
Normal
0.3
196
Normal
0.3
858
Normal
0.3
432
Normal
0.3
526
Normal
0.3
514
Normal
0.3
672
Normal
0.2
352
Normal
0.2
422
Normal
0.2
666
Normal
0.2
911
Tumor
0.2
123
Tumor
0.2
376
Normal
0.2
664
Normal
0.2
388
Normal
0.2
414
Normal
0.2
477
Tumor
0.2
662
Normal
0.2
912
Normal
0.2
462
Normal
0.2
111
Normal
0.2
518
Normal
0.2
615
Tumor
0.2
463
Tumor
0.2
723
Tumor
0.2
137
Tumor
0.2
914
Normal
0.2
564
Normal
0.2
873
Tumor
0.2
628
Normal
0.2
124
Normal
0.2
727
Tumor
0.2
574
Normal
0.2
148
Normal
0.2
616
Normal
0.2
222
Normal
0.2
642
Normal
0.2
1021
Tumor
0.2
426
Normal
0.2
162
Normal
0.2
975
Tumor
0.2
368
Normal
0.2
396
Normal
0.2
423
Tumor
0.2
456
Normal
0.2
278
Normal
0.2
191
Tumor
0.2
818
Normal
0.2
351
Tumor
0.2
618
Normal
0.1
187
Tumor
0.1
866
Normal
0.1
786
Normal
0.1
515
Tumor
0.1
261
Tumor
0.1
1016
Normal
0.1
435
Tumor
0.1
267
Tumor
0.1
981
Tumor
0.1
392
Normal
0.1
964
Normal
0.1
686
Normal
0.1
427
Tumor
0.1
714
Normal
0.1
285
Tumor
0.1
394
Normal
0.1
568
Normal
0.1
214
Normal
0.1
467
Tumor
0.1
481
Tumor
0.1
257
Tumor
0.1
128
Normal
0.1
362
Normal
0.1
881
Tumor
0.1
1026
Normal
0.1
745
Tumor
0.1
464
Normal
0.1
715
Tumor
0.1
648
Normal
0.1
192
Normal
0.1
814
Normal
0.1
386
Normal
0.1
186
Normal
0.1
434
Normal
0.1
171
Tumor
0.1
112
Tumor
0.1
126
Normal
0.1
146
Normal
0.1
217
Tumor
0.1
878
Normal
0.1
813
Tumor
0.1
877
Tumor
0.1
824
Normal
0.1
312
Normal
0.1
387
Tumor
0.1
366
Normal
0.1
393
Tumor
0.0
884
Normal
0.0
384
Normal
0.0
446
Normal
0.0
756
Normal
0.0
395
Tumor
0.0
444
Normal
0.0
983
Tumor
0.0
385
Tumor
0.0
984
Normal
0.0
142
Normal
0.0
466
Normal
0.0
978
Normal
0.0
433
Tumor
0.0
665
Tumor
0.0
114
Normal
0.0
224
Normal
0.0
363
Tumor
0.0
913
Tumor
0.0
136
Normal
0.0
882
Normal
0.0
777
Tumor
0.0
488
Normal
0.0
524
Normal
0.0
716
Normal
0.0
431
Tumor
0.0
738
Normal
0.0
1014
Normal
0.0
284
Normal
0.0
451
Tumor
0.0
874
Normal
0.0
227
Tumor
0.0
383
Tumor
0.0
926
Normal
0.0
966
Normal
0.0
483
Tumor
0.0
375
Tumor
0.0
161
Tumor
-0.1
523
Tumor
-0.1
472
Normal
-0.1
922
Normal
-0.1
1027
Tumor
-0.1
963
Tumor
-0.1
982
Normal
-0.1
915
Tumor
-0.1
722
Normal
-0.1
212
Normal
-0.1
452
Normal
-0.1
816
Normal
-0.1
572
Normal
-0.1
955
Tumor
-0.1
976
Normal
-0.1
411
Tumor
-0.1
113
Tumor
-0.1
943
Tumor
-0.1
558
Normal
-0.1
141
Tumor
-0.1
223
Tumor
-0.1
967
Tumor
-0.1
755
Tumor
-0.1
195
Tumor
-0.1
131
Tumor
-0.1
461
Tumor
-0.1
861
Tumor
-0.1
468
Normal
-0.1
125
Tumor
-0.1
737
Tumor
-0.1
1028
Normal
-0.1
952
Normal
-0.1
1045
Tumor
-0.2
1032
Normal
-0.2
482
Normal
-0.2
188
Normal
-0.2
925
Tumor
-0.2
864
Normal
-0.2
365
Tumor
-0.2
1015
Tumor
-0.2
497
Tumor
-0.2
474
Normal
-0.2
494
Normal
-0.2
815
Tumor
-0.2
416
Normal
-0.2
138
Normal
-0.2
1031
Tumor
-0.2
785
Tumor
-0.2
921
Tumor
-0.2
412
Normal
-0.2
778
Normal
-0.2
367
Tumor
-0.2
415
Tumor
-0.2
525
Tumor
-0.2
956
Normal
-0.2
954
Normal
-0.2
865
Tumor
-0.2
958
Normal
-0.2
557
Tumor
-0.3
1022
Normal
-0.3
516
Normal
-0.3
331
Tumor
-0.3
851
Tumor
-0.3
924
Normal
-0.3
228
Normal
-0.3
356
Normal
-0.3
696
Normal
-0.3
918
Normal
-0.3
852
Normal
-0.3
455
Tumor
-0.3
968
Normal
-0.3
493
Tumor
-0.3
923
Tumor
-0.3
328
Normal
-0.3
498
Normal
-0.3
857
Tumor
-0.4
938
Normal
-0.4
661
Tumor
-0.4
1041
Tumor
-0.4
713
Tumor
-0.4
916
Normal
-0.4
484
Normal
-0.5
478
Normal
-0.5
944
Normal
-0.5
567
Tumor
-0.5
1042
Normal
-0.5
957
Tumor
-0.5
492
Normal
-0.5
327
Tumor
-0.5
473
Tumor
-0.5
364
Normal
-0.5
937
Tumor
-0.6
965
Tumor
-0.6
211
Tumor
-0.6
355
Tumor
-0.6
536
Normal
-0.6
283
Tumor
-0.7
297
Tumor
-0.7
917
Tumor
-0.7
447
Tumor
-0.8
1046
Normal
-0.8
491
Tumor
-0.8
487
Tumor
-0.8
313
Tumor
-0.9
953
Tumor
-0.9
527
Tumor
-1.0
535
Tumor
-1.1
528
Normal
-1.1
546
Normal
-1.2
533
Tumor
-1.3
534
Normal
-1.3
545
Tumor
-1.3
538
Normal
-1.6
728
Normal
-1.7
554
Normal
-1.7
537
Tumor
-1.8
553
Tumor
-2.0
742
Normal
-3.4
1044
Normal
N/A
1043
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
