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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.7
nTPM
HPA Brain:
24.4
nTPM
GTEx:
30.7
nTPM
FANTOM5:
12.9
Scaled Tags Per Million
Pig:
1.9
nTPM
Mouse:
0.5
nTPM
Allen mouse:
0.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 15.8
2219
Male, age 76, both hemispheres
26.4
2586
Male, age 75, left hemisphere
19.3
2828
Female, age 72, unknown
16.4
2411
Female, age 72, unknown
15.4
1827
Male, age 72, unknown
15.1
1833
Male, age 53, unknown
14.9
2666
Male, age 74, left hemisphere
14.1
1830
Male, age 51, unknown
13.3
1870
Female, age 42, unknown
12.2
2019
Male, age 18, unknown
10.6
Dorsal raphe nucleus nTPM: 15.3
2750
Male, age 76, both hemispheres
22.3
2047
Male, age 72, unknown
19.6
2298
Female, age 72, unknown
13.2
1828
Male, age 53, unknown
11.2
2016
Female, age 72, unknown
10.2
Inferior colliculus nTPM: 13.3
2097
Female, age 72, unknown
16.4
1890
Male, age 53, unknown
13.2
1848
Female, age 42, unknown
12.2
2849
Male, age 72, unknown
11.5
Median raphe nucleus nTPM: 24.4
2220
Male, age 76, midline
24.4
Periaquaductal grey, anterior nTPM: 14.2
1795
Male, age 51, unknown
16.9
1947
Male, age 18, unknown
16.7
2502
Female, age 75, unknown
8.9
Periaquaductal grey, dorsal nTPM: 14.2
1831
Male, age 72, unknown
17.6
2850
Male, age 76, both hemispheres
14.6
2464
Female, age 72, unknown
12.6
1840
Male, age 53, unknown
11.9
Periaquaductal grey, lateral nTPM: 14.1
2053
Male, age 18, unknown
16.2
2140
Male, age 76, both hemispheres
13.4
2272
Male, age 74, both hemispheres
12.7
Pretectal area nTPM: 15.3
1816
Male, age 51, unknown
19.3
2224
Female, age 72, unknown
16.8
2407
Male, age 75, both hemispheres
16.6
1944
Female, age 72, unknown
16.2
2007
Male, age 72, unknown
16.0
1815
Male, age 53, unknown
15.6
2667
Female, age 75, unknown
15.6
2825
Male, age 18, unknown
15.2
2316
Male, age 76, right hemisphere
13.0
1817
Female, age 42, unknown
12.4
2273
Male, age 74, both hemispheres
11.2
Red nucleus nTPM: 13.1
2588
Male, age 74, left hemisphere
18.6
2584
Male, age 75, left hemisphere
18.3
2823
Male, age 76, right hemisphere
17.2
1865
Male, age 51, unknown
13.2
2785
Male, age 18, unknown
13.1
1904
Male, age 53, unknown
13.0
2725
Female, age 75, unknown
11.7
2769
Male, age 72, unknown
11.4
2227
Male, age 72, unknown
11.1
2503
Female, age 72, unknown
10.3
1954
Female, age 42, unknown
9.6
1821
Female, age 72, unknown
9.1
Substantia nigra nTPM: 13.1
2590
Female, age 75, unknown
17.8
1941
Male, age 53, unknown
15.1
1916
Female, age 42, unknown
13.7
1851
Male, age 51, unknown
12.8
1889
Female, age 72, unknown
12.6
2583
Male, age 75, right hemisphere
12.3
2665
Male, age 74, both hemispheres
12.2
2699
Male, age 18, unknown
12.1
2409
Female, age 72, unknown
11.8
2241
Male, age 72, unknown
10.5
Superior colliculus nTPM: 14.5
2087
Female, age 72, unknown
18.0
1913
Female, age 42, unknown
16.8
2668
Female, age 75, unknown
16.7
2261
Male, age 18, unknown
15.0
1796
Male, age 53, unknown
14.9
1995
Male, age 72, unknown
14.5
2664
Male, age 75, both hemispheres
13.2
1895
Male, age 76, right hemisphere
13.0
2587
Male, age 74, left hemisphere
12.4
1839
Male, age 51, unknown
10.6
Ventral tegmental area nTPM: 15.1
2218
Male, age 76, both hemispheres
18.8
2021
Male, age 53, unknown
18.3
2223
Female, age 72, unknown
16.7
1942
Male, age 51, unknown
14.2
1915
Female, age 42, unknown
12.3
2410
Female, age 72, unknown
10.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
30.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 30.7
Samples: 139
Max nTPM: 97.3
Min nTPM: 7.8
Std nTPM: 12.2
Median nTPM: 28.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
97.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
62.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
61.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
59.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
56.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
55.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
50.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
50.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
47.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
46.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
46.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
46.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
46.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
45.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
45.4
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
45.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
44.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
44.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
42.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
41.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
41.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
40.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
40.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
40.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
40.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
40.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
39.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
38.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
38.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
37.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
37.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
37.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
37.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
37.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
37.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
36.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
36.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
36.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
36.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
36.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
36.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
35.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
34.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
34.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
33.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
33.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
33.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
33.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
33.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
33.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
32.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
32.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
32.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
32.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
32.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
32.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
31.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
31.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
31.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
31.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
30.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
30.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
30.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
30.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
29.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
29.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
29.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
29.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
28.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
28.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
27.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
27.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
27.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
27.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
27.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
27.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
27.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
26.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
26.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
26.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
26.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
26.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
26.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
26.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
26.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
26.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
25.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
25.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
25.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
25.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
24.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
24.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
24.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
24.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
24.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
24.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
24.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
24.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
24.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
23.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
23.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
23.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
23.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
23.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
22.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
22.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
22.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
21.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
21.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
21.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
21.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
21.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
21.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
20.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
20.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
20.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
20.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
19.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
19.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
19.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
18.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
17.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
16.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
12.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
12.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
12.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
11.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
11.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
8.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
8.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
7.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.5
Samples: 4
Max nTPM: 0.9
Min nTPM: 0.0
Sample A
Male
0.7
Sample B
Male
0.5
Sample C
Female
0.0
Sample D
Female
0.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.