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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FMO4 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
81.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
41.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
41.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
27.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
27.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FMO4 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
231
Samples
Sample
Description
TPM
DO50783
0 years, male, NA, stage:3, alive, 480 days
57.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
57.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
55.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
50.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
47.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
46.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
45.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
45.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
39.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
36.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
33.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
1.7
685
Tumor
1.1
615
Tumor
1.1
911
Tumor
1.0
861
Tumor
1.0
755
Tumor
0.9
411
Tumor
0.9
137
Tumor
0.9
365
Tumor
0.9
665
Tumor
0.9
436
Normal
0.8
977
Tumor
0.8
627
Tumor
0.8
342
Normal
0.8
513
Tumor
0.8
128
Normal
0.8
314
Normal
0.8
981
Tumor
0.8
862
Normal
0.7
278
Normal
0.7
515
Tumor
0.7
882
Normal
0.7
431
Tumor
0.7
1028
Normal
0.7
366
Normal
0.7
915
Tumor
0.7
162
Normal
0.6
488
Normal
0.6
341
Tumor
0.6
1022
Normal
0.6
172
Normal
0.6
286
Normal
0.6
742
Normal
0.6
124
Normal
0.6
698
Normal
0.6
568
Normal
0.6
878
Normal
0.6
196
Normal
0.6
426
Normal
0.6
171
Tumor
0.6
1046
Normal
0.6
445
Tumor
0.6
465
Tumor
0.6
423
Tumor
0.5
686
Normal
0.5
422
Normal
0.5
866
Normal
0.5
914
Normal
0.5
354
Normal
0.5
744
Normal
0.5
148
Normal
0.5
738
Normal
0.5
1026
Normal
0.5
448
Normal
0.5
564
Normal
0.5
778
Normal
0.5
222
Normal
0.5
884
Normal
0.5
432
Normal
0.5
472
Normal
0.5
258
Normal
0.5
414
Normal
0.5
111
Normal
0.4
126
Normal
0.4
358
Normal
0.4
741
Tumor
0.4
746
Normal
0.4
1014
Normal
0.4
952
Normal
0.4
352
Normal
0.4
1041
Tumor
0.4
964
Normal
0.4
572
Normal
0.4
396
Normal
0.4
662
Normal
0.4
362
Normal
0.4
816
Normal
0.4
546
Normal
0.4
554
Normal
0.4
394
Normal
0.4
618
Normal
0.4
123
Tumor
0.4
298
Normal
0.4
534
Normal
0.4
462
Normal
0.4
696
Normal
0.4
922
Normal
0.4
146
Normal
0.4
728
Normal
0.4
456
Normal
0.4
824
Normal
0.4
127
Tumor
0.3
434
Normal
0.3
912
Normal
0.3
138
Normal
0.3
446
Normal
0.3
818
Normal
0.3
464
Normal
0.3
231
Tumor
0.3
714
Normal
0.3
926
Normal
0.3
435
Tumor
0.3
558
Normal
0.3
664
Normal
0.3
874
Normal
0.3
114
Normal
0.3
873
Tumor
0.3
723
Tumor
0.3
514
Normal
0.3
466
Normal
0.3
477
Tumor
0.3
376
Normal
0.3
328
Normal
0.3
648
Normal
0.3
356
Normal
0.3
481
Tumor
0.3
482
Normal
0.3
161
Tumor
0.3
232
Normal
0.3
642
Normal
0.3
327
Tumor
0.3
958
Normal
0.2
353
Tumor
0.2
412
Normal
0.2
261
Tumor
0.2
425
Tumor
0.2
786
Normal
0.2
452
Normal
0.2
212
Normal
0.2
636
Normal
0.2
142
Normal
0.2
132
Normal
0.2
982
Normal
0.2
616
Normal
0.2
913
Tumor
0.2
494
Normal
0.2
428
Normal
0.2
141
Tumor
0.2
756
Normal
0.2
228
Normal
0.2
1045
Tumor
0.2
1015
Tumor
0.2
224
Normal
0.2
468
Normal
0.2
1032
Normal
0.2
136
Normal
0.2
968
Normal
0.2
955
Tumor
0.2
858
Normal
0.2
716
Normal
0.2
938
Normal
0.2
538
Normal
0.2
635
Tumor
0.2
364
Normal
0.1
218
Normal
0.1
516
Normal
0.1
384
Normal
0.1
332
Normal
0.1
528
Normal
0.1
312
Normal
0.1
186
Normal
0.1
954
Normal
0.1
383
Tumor
0.1
966
Normal
0.1
526
Normal
0.1
924
Normal
0.1
727
Tumor
0.1
852
Normal
0.1
424
Normal
0.1
864
Normal
0.1
863
Tumor
0.1
666
Normal
0.1
785
Tumor
0.1
937
Tumor
0.1
433
Tumor
0.1
1042
Normal
0.1
344
Normal
0.1
214
Normal
0.1
918
Normal
0.1
392
Normal
0.1
956
Normal
0.0
715
Tumor
0.0
1043
Tumor
0.0
976
Normal
0.0
1044
Normal
0.0
722
Normal
0.0
1016
Normal
0.0
563
Tumor
0.0
628
Normal
0.0
518
Normal
0.0
868
Normal
0.0
195
Tumor
0.0
484
Normal
0.0
416
Normal
0.0
461
Tumor
0.0
978
Normal
0.0
474
Normal
0.0
443
Tumor
-0.1
984
Normal
-0.1
574
Normal
-0.1
925
Tumor
-0.1
524
Normal
-0.1
145
Tumor
-0.1
268
Normal
-0.1
672
Normal
-0.1
113
Tumor
-0.1
262
Normal
-0.1
368
Normal
-0.1
361
Tumor
-0.1
1027
Tumor
-0.1
963
Tumor
-0.2
478
Normal
-0.2
223
Tumor
-0.2
557
Tumor
-0.2
444
Normal
-0.2
916
Normal
-0.2
415
Tumor
-0.2
451
Tumor
-0.2
272
Normal
-0.2
185
Tumor
-0.3
695
Tumor
-0.3
498
Normal
-0.3
953
Tumor
-0.3
737
Tumor
-0.3
188
Normal
-0.3
191
Tumor
-0.3
883
Tumor
-0.3
386
Normal
-0.3
857
Tumor
-0.3
357
Tumor
-0.4
388
Normal
-0.4
192
Normal
-0.4
112
Tumor
-0.4
487
Tumor
-0.4
545
Tumor
-0.4
257
Tumor
-0.5
421
Tumor
-0.5
663
Tumor
-0.5
944
Normal
-0.5
641
Tumor
-0.5
363
Tumor
-0.5
217
Tumor
-0.5
814
Normal
-0.5
313
Tumor
-0.5
921
Tumor
-0.5
1013
Tumor
-0.6
492
Normal
-0.6
647
Tumor
-0.6
881
Tumor
-0.6
284
Normal
-0.6
187
Tumor
-0.6
865
Tumor
-0.6
536
Normal
-0.6
271
Tumor
-0.6
455
Tumor
-0.7
553
Tumor
-0.7
473
Tumor
-0.7
267
Tumor
-0.7
721
Tumor
-0.7
867
Tumor
-0.7
483
Tumor
-0.7
447
Tumor
-0.7
724
Normal
-0.7
975
Tumor
-0.7
471
Tumor
-0.7
467
Tumor
-0.7
493
Tumor
-0.8
713
Tumor
-0.8
813
Tumor
-0.8
227
Tumor
-0.8
533
Tumor
-0.8
221
Tumor
-0.8
1021
Tumor
-0.8
823
Tumor
-0.8
147
Tumor
-0.8
745
Tumor
-0.9
527
Tumor
-0.9
297
Tumor
-0.9
491
Tumor
-0.9
851
Tumor
-1.0
1031
Tumor
-1.0
125
Tumor
-1.0
923
Tumor
-1.0
277
Tumor
-1.0
135
Tumor
-1.0
393
Tumor
-1.1
617
Tumor
-1.1
917
Tumor
-1.2
497
Tumor
-1.2
213
Tumor
-1.2
523
Tumor
-1.2
355
Tumor
-1.2
1025
Tumor
-1.3
387
Tumor
-1.3
571
Tumor
-1.3
413
Tumor
-1.3
463
Tumor
-1.3
131
Tumor
-1.4
697
Tumor
-1.4
877
Tumor
-1.4
395
Tumor
-1.5
671
Tumor
-1.6
375
Tumor
-1.7
957
Tumor
-1.7
943
Tumor
-1.7
517
Tumor
-1.7
427
Tumor
-1.7
343
Tumor
-1.8
525
Tumor
-1.8
951
Tumor
-1.8
351
Tumor
-1.8
311
Tumor
-1.8
331
Tumor
-1.9
983
Tumor
-1.9
537
Tumor
-1.9
817
Tumor
-2.0
815
Tumor
-2.0
965
Tumor
-2.0
661
Tumor
-2.0
743
Tumor
-2.1
967
Tumor
-2.2
211
Tumor
-2.3
367
Tumor
-2.3
567
Tumor
-2.3
535
Tumor
-2.3
283
Tumor
-2.3
391
Tumor
-2.5
573
Tumor
-2.5
285
Tumor
-2.7
385
Tumor
-3.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.