We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MKRN2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MKRN2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.9
391
Tumor
0.6
1041
Tumor
0.6
951
Tumor
0.6
351
Tumor
0.5
1031
Tumor
0.5
533
Tumor
0.4
746
Normal
0.4
367
Tumor
0.4
358
Normal
0.4
636
Normal
0.4
131
Tumor
0.4
271
Tumor
0.4
445
Tumor
0.4
882
Normal
0.4
925
Tumor
0.4
477
Tumor
0.3
354
Normal
0.3
737
Tumor
0.3
616
Normal
0.3
285
Tumor
0.3
528
Normal
0.3
745
Tumor
0.3
161
Tumor
0.3
983
Tumor
0.3
1042
Normal
0.3
385
Tumor
0.3
554
Normal
0.3
1015
Tumor
0.3
568
Normal
0.3
695
Tumor
0.3
883
Tumor
0.3
724
Normal
0.3
744
Normal
0.3
617
Tumor
0.3
387
Tumor
0.3
331
Tumor
0.3
123
Tumor
0.3
112
Tumor
0.3
546
Normal
0.3
553
Tumor
0.3
615
Tumor
0.3
352
Normal
0.3
818
Normal
0.3
267
Tumor
0.3
344
Normal
0.3
446
Normal
0.3
963
Tumor
0.3
567
Tumor
0.3
665
Tumor
0.3
663
Tumor
0.2
881
Tumor
0.2
912
Normal
0.2
534
Normal
0.2
341
Tumor
0.2
937
Tumor
0.2
1028
Normal
0.2
738
Normal
0.2
436
Normal
0.2
574
Normal
0.2
944
Normal
0.2
618
Normal
0.2
851
Tumor
0.2
628
Normal
0.2
137
Tumor
0.2
342
Normal
0.2
778
Normal
0.2
698
Normal
0.2
878
Normal
0.2
952
Normal
0.2
415
Tumor
0.2
572
Normal
0.2
815
Tumor
0.2
924
Normal
0.2
484
Normal
0.2
884
Normal
0.2
865
Tumor
0.2
515
Tumor
0.2
474
Normal
0.2
537
Tumor
0.2
714
Normal
0.2
977
Tumor
0.2
1021
Tumor
0.2
1022
Normal
0.2
642
Normal
0.2
432
Normal
0.2
473
Tumor
0.2
1014
Normal
0.2
938
Normal
0.2
627
Tumor
0.2
1032
Normal
0.2
526
Normal
0.2
858
Normal
0.2
866
Normal
0.2
472
Normal
0.2
955
Tumor
0.2
824
Normal
0.2
926
Normal
0.2
964
Normal
0.2
564
Normal
0.2
142
Normal
0.2
1016
Normal
0.2
514
Normal
0.2
425
Tumor
0.2
1045
Tumor
0.2
956
Normal
0.1
125
Tumor
0.1
1026
Normal
0.1
383
Tumor
0.1
277
Tumor
0.1
228
Normal
0.1
231
Tumor
0.1
412
Normal
0.1
482
Normal
0.1
431
Tumor
0.1
817
Tumor
0.1
558
Normal
0.1
375
Tumor
0.1
966
Normal
0.1
857
Tumor
0.1
423
Tumor
0.1
283
Tumor
0.1
298
Normal
0.1
984
Normal
0.1
185
Tumor
0.1
353
Tumor
0.1
232
Normal
0.1
563
Tumor
0.1
363
Tumor
0.1
357
Tumor
0.1
816
Normal
0.1
462
Normal
0.1
1044
Normal
0.1
922
Normal
0.1
982
Normal
0.1
483
Tumor
0.1
113
Tumor
0.1
813
Tumor
0.1
314
Normal
0.1
1025
Tumor
0.1
416
Normal
0.1
978
Normal
0.1
332
Normal
0.1
491
Tumor
0.1
671
Tumor
0.1
518
Normal
0.1
343
Tumor
0.1
135
Tumor
0.1
981
Tumor
0.1
728
Normal
0.1
921
Tumor
0.1
862
Normal
0.1
312
Normal
0.1
648
Normal
0.1
1043
Tumor
0.1
742
Normal
0.1
456
Normal
0.1
395
Tumor
0.1
196
Normal
0.1
111
Normal
0.1
136
Normal
0.1
286
Normal
0.1
411
Tumor
0.1
364
Normal
0.1
916
Normal
0.1
664
Normal
0.1
852
Normal
0.1
132
Normal
0.1
128
Normal
0.1
786
Normal
0.1
435
Tumor
0.1
257
Tumor
0.1
968
Normal
0.1
464
Normal
0.1
954
Normal
0.1
124
Normal
0.1
355
Tumor
0.1
261
Tumor
0.1
722
Normal
0.1
641
Tumor
0.1
141
Tumor
0.1
913
Tumor
0.1
756
Normal
0.1
741
Tumor
0.1
421
Tumor
0.0
777
Tumor
0.0
444
Normal
0.0
127
Tumor
0.0
138
Normal
0.0
573
Tumor
0.0
284
Normal
0.0
917
Tumor
0.0
914
Normal
0.0
218
Normal
0.0
696
Normal
0.0
114
Normal
0.0
516
Normal
0.0
262
Normal
0.0
428
Normal
0.0
434
Normal
0.0
538
Normal
0.0
873
Tumor
0.0
376
Normal
0.0
384
Normal
0.0
211
Tumor
0.0
148
Normal
0.0
463
Tumor
0.0
471
Tumor
0.0
975
Tumor
0.0
918
Normal
0.0
214
Normal
0.0
976
Normal
0.0
868
Normal
0.0
455
Tumor
0.0
392
Normal
0.0
911
Tumor
0.0
278
Normal
0.0
661
Tumor
0.0
525
Tumor
0.0
513
Tumor
0.0
823
Tumor
0.0
268
Normal
0.0
697
Tumor
0.0
571
Tumor
0.0
297
Tumor
0.0
146
Normal
0.0
222
Normal
0.0
448
Normal
0.0
672
Normal
0.0
224
Normal
0.0
327
Tumor
0.0
755
Tumor
0.0
478
Normal
0.0
715
Tumor
0.0
686
Normal
0.0
723
Tumor
0.0
864
Normal
0.0
923
Tumor
0.0
396
Normal
0.0
492
Normal
0.0
443
Tumor
0.0
494
Normal
0.0
362
Normal
0.0
465
Tumor
0.0
414
Normal
0.0
874
Normal
0.0
217
Tumor
0.0
915
Tumor
0.0
524
Normal
0.0
328
Normal
0.0
313
Tumor
0.0
666
Normal
0.0
187
Tumor
0.0
424
Normal
0.0
171
Tumor
0.0
422
Normal
0.0
953
Tumor
0.0
227
Tumor
0.0
258
Normal
0.0
716
Normal
0.0
536
Normal
0.0
863
Tumor
-0.1
145
Tumor
-0.1
861
Tumor
-0.1
713
Tumor
-0.1
433
Tumor
-0.1
523
Tumor
-0.1
535
Tumor
-0.1
186
Normal
-0.1
958
Normal
-0.1
481
Tumor
-0.1
468
Normal
-0.1
356
Normal
-0.1
427
Tumor
-0.1
426
Normal
-0.1
662
Normal
-0.1
365
Tumor
-0.1
272
Normal
-0.1
647
Tumor
-0.1
451
Tumor
-0.1
517
Tumor
-0.1
388
Normal
-0.1
162
Normal
-0.1
126
Normal
-0.1
192
Normal
-0.1
452
Normal
-0.1
743
Tumor
-0.1
466
Normal
-0.1
368
Normal
-0.1
221
Tumor
-0.1
386
Normal
-0.1
467
Tumor
-0.1
957
Tumor
-0.1
461
Tumor
-0.1
867
Tumor
-0.1
212
Normal
-0.1
413
Tumor
-0.1
311
Tumor
-0.1
1046
Normal
-0.1
943
Tumor
-0.1
721
Tumor
-0.1
498
Normal
-0.1
361
Tumor
-0.1
366
Normal
-0.2
877
Tumor
-0.2
223
Tumor
-0.2
1013
Tumor
-0.2
147
Tumor
-0.2
191
Tumor
-0.2
195
Tumor
-0.2
1027
Tumor
-0.2
188
Normal
-0.2
172
Normal
-0.2
814
Normal
-0.2
545
Tumor
-0.2
394
Normal
-0.3
557
Tumor
-0.3
393
Tumor
-0.3
785
Tumor
-0.3
497
Tumor
-0.4
727
Tumor
-0.4
527
Tumor
-0.4
213
Tumor
-0.5
967
Tumor
-0.5
447
Tumor
-0.5
488
Normal
-0.5
493
Tumor
-0.6
635
Tumor
-0.7
487
Tumor
-0.9
685
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
