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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SART3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SART3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.0
743
Tumor
0.9
967
Tumor
0.9
965
Tumor
0.8
1013
Tumor
0.8
351
Tumor
0.8
777
Tumor
0.8
131
Tumor
0.8
473
Tumor
0.7
331
Tumor
0.7
367
Tumor
0.7
877
Tumor
0.7
535
Tumor
0.7
727
Tumor
0.7
411
Tumor
0.7
695
Tumor
0.6
545
Tumor
0.6
285
Tumor
0.6
497
Tumor
0.6
937
Tumor
0.6
355
Tumor
0.6
815
Tumor
0.6
487
Tumor
0.5
661
Tumor
0.5
983
Tumor
0.5
385
Tumor
0.5
123
Tumor
0.5
785
Tumor
0.5
517
Tumor
0.5
573
Tumor
0.4
1031
Tumor
0.4
413
Tumor
0.4
425
Tumor
0.4
523
Tumor
0.4
533
Tumor
0.4
671
Tumor
0.4
313
Tumor
0.4
647
Tumor
0.4
953
Tumor
0.4
741
Tumor
0.4
715
Tumor
0.3
1015
Tumor
0.3
951
Tumor
0.3
567
Tumor
0.3
431
Tumor
0.3
161
Tumor
0.3
395
Tumor
0.3
211
Tumor
0.3
851
Tumor
0.3
477
Tumor
0.3
363
Tumor
0.3
387
Tumor
0.3
185
Tumor
0.3
135
Tumor
0.3
463
Tumor
0.3
977
Tumor
0.3
375
Tumor
0.3
171
Tumor
0.2
925
Tumor
0.2
537
Tumor
0.2
713
Tumor
0.2
513
Tumor
0.2
277
Tumor
0.2
267
Tumor
0.2
447
Tumor
0.2
685
Tumor
0.2
921
Tumor
0.2
1025
Tumor
0.2
975
Tumor
0.2
141
Tumor
0.2
483
Tumor
0.2
917
Tumor
0.2
465
Tumor
0.2
391
Tumor
0.2
881
Tumor
0.2
283
Tumor
0.2
297
Tumor
0.2
455
Tumor
0.2
271
Tumor
0.2
635
Tumor
0.2
261
Tumor
0.2
663
Tumor
0.2
737
Tumor
0.2
435
Tumor
0.2
943
Tumor
0.1
911
Tumor
0.1
357
Tumor
0.1
112
Tumor
0.1
981
Tumor
0.1
817
Tumor
0.1
137
Tumor
0.1
231
Tumor
0.1
461
Tumor
0.1
341
Tumor
0.1
383
Tumor
0.1
443
Tumor
0.1
724
Normal
0.1
665
Tumor
0.1
445
Tumor
0.1
423
Tumor
0.1
873
Tumor
0.1
813
Tumor
0.1
1021
Tumor
0.1
493
Tumor
0.1
923
Tumor
0.1
471
Tumor
0.1
525
Tumor
0.1
127
Tumor
0.1
113
Tumor
0.1
433
Tumor
0.1
553
Tumor
0.1
365
Tumor
0.1
865
Tumor
0.1
427
Tumor
0.1
1014
Normal
0.1
1041
Tumor
0.0
415
Tumor
0.0
563
Tumor
0.0
492
Normal
0.0
491
Tumor
0.0
327
Tumor
0.0
192
Normal
0.0
515
Tumor
0.0
145
Tumor
0.0
984
Normal
0.0
217
Tumor
0.0
963
Tumor
0.0
615
Tumor
0.0
467
Tumor
0.0
451
Tumor
0.0
536
Normal
0.0
1043
Tumor
0.0
268
Normal
0.0
125
Tumor
0.0
524
Normal
0.0
187
Tumor
0.0
516
Normal
0.0
221
Tumor
0.0
554
Normal
0.0
343
Tumor
0.0
915
Tumor
0.0
913
Tumor
0.0
223
Tumor
0.0
257
Tumor
0.0
147
Tumor
0.0
498
Normal
0.0
627
Tumor
0.0
883
Tumor
0.0
434
Normal
0.0
538
Normal
0.0
755
Tumor
0.0
393
Tumor
0.0
571
Tumor
0.0
744
Normal
0.0
814
Normal
0.0
861
Tumor
0.0
213
Tumor
0.0
227
Tumor
0.0
444
Normal
0.0
361
Tumor
0.0
916
Normal
0.0
195
Tumor
-0.1
955
Tumor
-0.1
617
Tumor
-0.1
312
Normal
-0.1
982
Normal
-0.1
823
Tumor
-0.1
686
Normal
-0.1
954
Normal
-0.1
1016
Normal
-0.1
478
Normal
-0.1
978
Normal
-0.1
518
Normal
-0.1
867
Tumor
-0.1
857
Tumor
-0.1
924
Normal
-0.1
1045
Tumor
-0.1
384
Normal
-0.1
494
Normal
-0.1
858
Normal
-0.1
412
Normal
-0.1
484
Normal
-0.1
328
Normal
-0.1
696
Normal
-0.1
756
Normal
-0.1
922
Normal
-0.1
745
Tumor
-0.1
311
Tumor
-0.1
918
Normal
-0.1
278
Normal
-0.1
878
Normal
-0.1
721
Tumor
-0.1
786
Normal
-0.1
926
Normal
-0.1
272
Normal
-0.1
364
Normal
-0.1
952
Normal
-0.1
188
Normal
-0.1
344
Normal
-0.1
191
Tumor
-0.1
488
Normal
-0.1
944
Normal
-0.1
546
Normal
-0.1
126
Normal
-0.1
448
Normal
-0.1
1028
Normal
-0.1
224
Normal
-0.1
386
Normal
-0.1
1032
Normal
-0.1
742
Normal
-0.1
298
Normal
-0.1
353
Tumor
-0.1
146
Normal
-0.1
1046
Normal
-0.1
716
Normal
-0.1
352
Normal
-0.1
1042
Normal
-0.1
534
Normal
-0.2
332
Normal
-0.2
746
Normal
-0.2
966
Normal
-0.2
641
Tumor
-0.2
514
Normal
-0.2
284
Normal
-0.2
778
Normal
-0.2
874
Normal
-0.2
882
Normal
-0.2
474
Normal
-0.2
362
Normal
-0.2
968
Normal
-0.2
148
Normal
-0.2
472
Normal
-0.2
212
Normal
-0.2
824
Normal
-0.2
912
Normal
-0.2
714
Normal
-0.2
956
Normal
-0.2
456
Normal
-0.2
884
Normal
-0.2
138
Normal
-0.2
852
Normal
-0.2
526
Normal
-0.2
672
Normal
-0.2
481
Tumor
-0.2
186
Normal
-0.2
172
Normal
-0.2
392
Normal
-0.2
356
Normal
-0.2
466
Normal
-0.2
938
Normal
-0.2
162
Normal
-0.2
124
Normal
-0.2
136
Normal
-0.2
111
Normal
-0.2
527
Tumor
-0.2
728
Normal
-0.2
866
Normal
-0.2
1026
Normal
-0.2
342
Normal
-0.2
818
Normal
-0.2
114
Normal
-0.2
262
Normal
-0.2
564
Normal
-0.2
396
Normal
-0.2
128
Normal
-0.2
142
Normal
-0.2
464
Normal
-0.2
662
Normal
-0.2
436
Normal
-0.2
914
Normal
-0.2
572
Normal
-0.2
428
Normal
-0.2
664
Normal
-0.2
462
Normal
-0.2
376
Normal
-0.2
214
Normal
-0.2
366
Normal
-0.2
738
Normal
-0.2
958
Normal
-0.2
864
Normal
-0.2
286
Normal
-0.2
232
Normal
-0.2
446
Normal
-0.2
628
Normal
-0.2
698
Normal
-0.2
528
Normal
-0.2
468
Normal
-0.3
558
Normal
-0.3
426
Normal
-0.3
388
Normal
-0.3
574
Normal
-0.3
432
Normal
-0.3
424
Normal
-0.3
964
Normal
-0.3
314
Normal
-0.3
723
Tumor
-0.3
1044
Normal
-0.3
258
Normal
-0.3
368
Normal
-0.3
421
Tumor
-0.3
218
Normal
-0.3
976
Normal
-0.3
228
Normal
-0.3
568
Normal
-0.3
196
Normal
-0.3
557
Tumor
-0.3
394
Normal
-0.3
416
Normal
-0.3
697
Tumor
-0.3
862
Normal
-0.3
618
Normal
-0.3
636
Normal
-0.3
722
Normal
-0.3
816
Normal
-0.3
482
Normal
-0.3
132
Normal
-0.3
358
Normal
-0.3
422
Normal
-0.3
222
Normal
-0.3
868
Normal
-0.3
1022
Normal
-0.3
414
Normal
-0.3
642
Normal
-0.4
616
Normal
-0.4
452
Normal
-0.4
648
Normal
-0.4
354
Normal
-0.4
666
Normal
-0.4
863
Tumor
-0.6
1027
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
