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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FNDC3B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
83.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
55.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
55.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
53.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
40.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FNDC3B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.4
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
51.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
40.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
36.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
34.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
24.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
387
Tumor
1.8
743
Tumor
1.2
343
Tumor
1.1
937
Tumor
1.0
497
Tumor
1.0
951
Tumor
1.0
285
Tumor
1.0
983
Tumor
0.9
367
Tumor
0.9
925
Tumor
0.9
525
Tumor
0.9
425
Tumor
0.9
567
Tumor
0.9
395
Tumor
0.8
535
Tumor
0.8
131
Tumor
0.8
125
Tumor
0.7
545
Tumor
0.7
363
Tumor
0.7
957
Tumor
0.6
327
Tumor
0.6
1015
Tumor
0.6
523
Tumor
0.6
463
Tumor
0.6
745
Tumor
0.6
851
Tumor
0.6
283
Tumor
0.6
817
Tumor
0.6
573
Tumor
0.6
921
Tumor
0.5
724
Normal
0.5
1025
Tumor
0.5
1021
Tumor
0.5
351
Tumor
0.5
815
Tumor
0.4
533
Tumor
0.4
557
Tumor
0.4
877
Tumor
0.4
467
Tumor
0.4
524
Normal
0.4
112
Tumor
0.4
943
Tumor
0.4
536
Normal
0.4
865
Tumor
0.4
661
Tumor
0.4
257
Tumor
0.4
221
Tumor
0.4
923
Tumor
0.4
213
Tumor
0.4
515
Tumor
0.4
671
Tumor
0.3
727
Tumor
0.3
443
Tumor
0.3
863
Tumor
0.3
311
Tumor
0.3
473
Tumor
0.3
823
Tumor
0.3
487
Tumor
0.3
737
Tumor
0.3
965
Tumor
0.3
967
Tumor
0.3
617
Tumor
0.3
537
Tumor
0.2
477
Tumor
0.2
447
Tumor
0.2
517
Tumor
0.2
721
Tumor
0.2
917
Tumor
0.2
696
Normal
0.2
223
Tumor
0.2
385
Tumor
0.2
195
Tumor
0.2
211
Tumor
0.2
331
Tumor
0.2
113
Tumor
0.2
161
Tumor
0.2
231
Tumor
0.2
755
Tumor
0.2
421
Tumor
0.2
427
Tumor
0.1
813
Tumor
0.1
881
Tumor
0.1
393
Tumor
0.1
217
Tumor
0.1
663
Tumor
0.1
271
Tumor
0.1
135
Tumor
0.1
413
Tumor
0.1
147
Tumor
0.1
975
Tumor
0.1
777
Tumor
0.1
814
Normal
0.1
553
Tumor
0.1
491
Tumor
0.1
966
Normal
0.1
187
Tumor
0.1
286
Normal
0.1
715
Tumor
0.1
171
Tumor
0.1
313
Tumor
0.1
883
Tumor
0.1
368
Normal
0.0
375
Tumor
0.0
455
Tumor
0.0
493
Tumor
0.0
137
Tumor
0.0
1044
Normal
0.0
857
Tumor
0.0
218
Normal
0.0
492
Normal
0.0
141
Tumor
0.0
538
Normal
0.0
1043
Tumor
0.0
526
Normal
0.0
647
Tumor
0.0
297
Tumor
0.0
977
Tumor
0.0
433
Tumor
0.0
498
Normal
0.0
383
Tumor
0.0
388
Normal
0.0
391
Tumor
0.0
665
Tumor
0.0
554
Normal
0.0
636
Normal
0.0
944
Normal
0.0
471
Tumor
0.0
228
Normal
-0.1
341
Tumor
-0.1
355
Tumor
-0.1
1031
Tumor
-0.1
145
Tumor
-0.1
913
Tumor
-0.1
448
Normal
-0.1
1013
Tumor
-0.1
1026
Normal
-0.1
191
Tumor
-0.1
124
Normal
-0.1
924
Normal
-0.1
352
Normal
-0.1
697
Tumor
-0.1
672
Normal
-0.1
186
Normal
-0.1
392
Normal
-0.1
568
Normal
-0.1
916
Normal
-0.1
111
Normal
-0.1
978
Normal
-0.1
984
Normal
-0.1
778
Normal
-0.1
873
Tumor
-0.1
114
Normal
-0.1
954
Normal
-0.1
527
Tumor
-0.1
142
Normal
-0.1
386
Normal
-0.1
268
Normal
-0.1
212
Normal
-0.1
558
Normal
-0.1
344
Normal
-0.1
952
Normal
-0.1
963
Tumor
-0.1
574
Normal
-0.1
514
Normal
-0.1
915
Tumor
-0.1
494
Normal
-0.1
981
Tumor
-0.1
864
Normal
-0.1
224
Normal
-0.1
861
Tumor
-0.1
563
Tumor
-0.1
394
Normal
-0.1
956
Normal
-0.2
953
Tumor
-0.2
232
Normal
-0.2
926
Normal
-0.2
358
Normal
-0.2
938
Normal
-0.2
431
Tumor
-0.2
132
Normal
-0.2
396
Normal
-0.2
136
Normal
-0.2
185
Tumor
-0.2
862
Normal
-0.2
416
Normal
-0.2
528
Normal
-0.2
912
Normal
-0.2
434
Normal
-0.2
564
Normal
-0.2
262
Normal
-0.2
918
Normal
-0.2
415
Tumor
-0.2
284
Normal
-0.2
227
Tumor
-0.2
353
Tumor
-0.2
686
Normal
-0.2
723
Tumor
-0.2
852
Normal
-0.2
423
Tumor
-0.2
214
Normal
-0.2
126
Normal
-0.2
138
Normal
-0.2
412
Normal
-0.2
188
Normal
-0.2
518
Normal
-0.2
662
Normal
-0.2
361
Tumor
-0.2
272
Normal
-0.2
955
Tumor
-0.2
123
Tumor
-0.2
713
Tumor
-0.2
641
Tumor
-0.2
488
Normal
-0.2
628
Normal
-0.2
474
Normal
-0.2
1045
Tumor
-0.2
878
Normal
-0.2
516
Normal
-0.2
635
Tumor
-0.2
1014
Normal
-0.2
376
Normal
-0.2
267
Tumor
-0.2
728
Normal
-0.3
146
Normal
-0.3
546
Normal
-0.3
666
Normal
-0.3
756
Normal
-0.3
1046
Normal
-0.3
1028
Normal
-0.3
446
Normal
-0.3
452
Normal
-0.3
982
Normal
-0.3
196
Normal
-0.3
483
Tumor
-0.3
642
Normal
-0.3
478
Normal
-0.3
222
Normal
-0.3
866
Normal
-0.3
365
Tumor
-0.3
258
Normal
-0.3
572
Normal
-0.3
445
Tumor
-0.3
192
Normal
-0.3
451
Tumor
-0.3
444
Normal
-0.3
816
Normal
-0.3
332
Normal
-0.3
277
Tumor
-0.3
1016
Normal
-0.3
716
Normal
-0.3
958
Normal
-0.3
461
Tumor
-0.3
627
Tumor
-0.3
1041
Tumor
-0.3
882
Normal
-0.3
162
Normal
-0.3
914
Normal
-0.3
414
Normal
-0.3
436
Normal
-0.3
1042
Normal
-0.3
685
Tumor
-0.3
1022
Normal
-0.4
354
Normal
-0.4
426
Normal
-0.4
422
Normal
-0.4
968
Normal
-0.4
513
Tumor
-0.4
648
Normal
-0.4
128
Normal
-0.4
922
Normal
-0.4
127
Tumor
-0.4
472
Normal
-0.4
172
Normal
-0.4
456
Normal
-0.4
618
Normal
-0.4
615
Tumor
-0.4
722
Normal
-0.4
468
Normal
-0.4
148
Normal
-0.4
742
Normal
-0.4
664
Normal
-0.4
464
Normal
-0.4
616
Normal
-0.4
314
Normal
-0.4
738
Normal
-0.4
432
Normal
-0.4
364
Normal
-0.4
884
Normal
-0.4
342
Normal
-0.4
785
Tumor
-0.4
312
Normal
-0.4
868
Normal
-0.4
482
Normal
-0.4
465
Tumor
-0.4
357
Tumor
-0.4
366
Normal
-0.5
278
Normal
-0.5
428
Normal
-0.5
328
Normal
-0.5
746
Normal
-0.5
534
Normal
-0.5
874
Normal
-0.5
356
Normal
-0.5
744
Normal
-0.5
484
Normal
-0.5
741
Tumor
-0.5
481
Tumor
-0.5
976
Normal
-0.5
964
Normal
-0.5
786
Normal
-0.5
384
Normal
-0.5
698
Normal
-0.5
424
Normal
-0.5
858
Normal
-0.5
462
Normal
-0.5
1027
Tumor
-0.5
362
Normal
-0.5
695
Tumor
-0.5
1032
Normal
-0.6
298
Normal
-0.6
818
Normal
-0.6
714
Normal
-0.6
435
Tumor
-0.6
466
Normal
-0.6
824
Normal
-0.6
261
Tumor
-0.6
867
Tumor
-0.7
571
Tumor
-0.7
911
Tumor
-0.8
411
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
