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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MARK3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MARK3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
73.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
47.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.0
737
Tumor
0.8
921
Tumor
0.7
863
Tumor
0.6
513
Tumor
0.6
917
Tumor
0.6
943
Tumor
0.5
967
Tumor
0.5
283
Tumor
0.5
131
Tumor
0.5
975
Tumor
0.5
777
Tumor
0.5
523
Tumor
0.5
813
Tumor
0.5
815
Tumor
0.4
963
Tumor
0.4
135
Tumor
0.4
257
Tumor
0.4
661
Tumor
0.4
627
Tumor
0.4
697
Tumor
0.4
125
Tumor
0.4
285
Tumor
0.4
966
Normal
0.4
814
Normal
0.4
1042
Normal
0.4
455
Tumor
0.3
536
Normal
0.3
881
Tumor
0.3
1027
Tumor
0.3
311
Tumor
0.3
924
Normal
0.3
866
Normal
0.3
968
Normal
0.3
546
Normal
0.3
221
Tumor
0.3
524
Normal
0.3
554
Normal
0.3
1026
Normal
0.3
498
Normal
0.3
713
Tumor
0.3
958
Normal
0.3
137
Tumor
0.3
1046
Normal
0.3
615
Tumor
0.3
463
Tumor
0.3
471
Tumor
0.3
518
Normal
0.2
1045
Tumor
0.2
484
Normal
0.2
785
Tumor
0.2
516
Normal
0.2
447
Tumor
0.2
964
Normal
0.2
641
Tumor
0.2
983
Tumor
0.2
862
Normal
0.2
538
Normal
0.2
911
Tumor
0.2
227
Tumor
0.2
527
Tumor
0.2
515
Tumor
0.2
478
Normal
0.2
141
Tumor
0.2
1043
Tumor
0.2
416
Normal
0.2
916
Normal
0.2
492
Normal
0.2
535
Tumor
0.2
857
Tumor
0.2
445
Tumor
0.2
1028
Normal
0.2
526
Normal
0.2
553
Tumor
0.2
514
Normal
0.2
271
Tumor
0.2
714
Normal
0.2
721
Tumor
0.2
745
Tumor
0.2
434
Normal
0.2
297
Tumor
0.2
412
Normal
0.2
192
Normal
0.2
817
Tumor
0.2
497
Tumor
0.2
1032
Normal
0.2
375
Tumor
0.2
944
Normal
0.2
328
Normal
0.2
472
Normal
0.2
415
Tumor
0.2
642
Normal
0.2
756
Normal
0.2
816
Normal
0.1
778
Normal
0.1
698
Normal
0.1
852
Normal
0.1
188
Normal
0.1
956
Normal
0.1
364
Normal
0.1
978
Normal
0.1
715
Tumor
0.1
864
Normal
0.1
955
Tumor
0.1
1015
Tumor
0.1
884
Normal
0.1
727
Tumor
0.1
723
Tumor
0.1
425
Tumor
0.1
385
Tumor
0.1
365
Tumor
0.1
448
Normal
0.1
1041
Tumor
0.1
474
Normal
0.1
686
Normal
0.1
435
Tumor
0.1
528
Normal
0.1
965
Tumor
0.1
267
Tumor
0.1
545
Tumor
0.1
1022
Normal
0.1
142
Normal
0.1
743
Tumor
0.1
952
Normal
0.1
363
Tumor
0.1
431
Tumor
0.1
617
Tumor
0.1
534
Normal
0.1
865
Tumor
0.1
1031
Tumor
0.1
873
Tumor
0.1
147
Tumor
0.1
616
Normal
0.1
877
Tumor
0.1
868
Normal
0.1
696
Normal
0.1
436
Normal
0.1
558
Normal
0.1
533
Tumor
0.1
882
Normal
0.1
462
Normal
0.1
1044
Normal
0.1
473
Tumor
0.1
824
Normal
0.1
746
Normal
0.1
918
Normal
0.1
261
Tumor
0.1
636
Normal
0.1
421
Tumor
0.1
126
Normal
0.1
136
Normal
0.1
258
Normal
0.1
716
Normal
0.1
356
Normal
0.1
618
Normal
0.1
494
Normal
0.1
984
Normal
0.1
851
Tumor
0.1
572
Normal
0.1
493
Tumor
0.1
728
Normal
0.1
212
Normal
0.1
914
Normal
0.1
1014
Normal
0.1
228
Normal
0.1
482
Normal
0.1
976
Normal
0.1
428
Normal
0.1
861
Tumor
0.1
214
Normal
0.1
272
Normal
0.1
286
Normal
0.1
427
Tumor
0.1
146
Normal
0.1
957
Tumor
0.1
742
Normal
0.1
878
Normal
0.1
298
Normal
0.1
1016
Normal
0.1
411
Tumor
0.1
663
Tumor
0.1
461
Tumor
0.1
874
Normal
0.1
185
Tumor
0.0
858
Normal
0.0
628
Normal
0.0
491
Tumor
0.0
954
Normal
0.0
671
Tumor
0.0
262
Normal
0.0
977
Tumor
0.0
481
Tumor
0.0
525
Tumor
0.0
517
Tumor
0.0
981
Tumor
0.0
786
Normal
0.0
343
Tumor
0.0
695
Tumor
0.0
218
Normal
0.0
537
Tumor
0.0
722
Normal
0.0
982
Normal
0.0
488
Normal
0.0
284
Normal
0.0
926
Normal
0.0
913
Tumor
0.0
413
Tumor
0.0
358
Normal
0.0
444
Normal
0.0
355
Tumor
0.0
818
Normal
0.0
196
Normal
0.0
222
Normal
0.0
132
Normal
0.0
362
Normal
0.0
923
Tumor
0.0
568
Normal
0.0
396
Normal
0.0
268
Normal
0.0
564
Normal
0.0
232
Normal
0.0
277
Tumor
0.0
487
Tumor
0.0
446
Normal
0.0
823
Tumor
0.0
432
Normal
0.0
114
Normal
0.0
331
Tumor
0.0
354
Normal
0.0
224
Normal
0.0
744
Normal
0.0
388
Normal
0.0
124
Normal
0.0
635
Tumor
0.0
912
Normal
0.0
466
Normal
0.0
724
Normal
0.0
662
Normal
0.0
195
Tumor
0.0
467
Tumor
0.0
938
Normal
0.0
223
Tumor
0.0
341
Tumor
0.0
414
Normal
0.0
922
Normal
0.0
574
Normal
0.0
127
Tumor
0.0
111
Normal
0.0
138
Normal
0.0
937
Tumor
0.0
443
Tumor
0.0
741
Tumor
0.0
925
Tumor
0.0
353
Tumor
-0.1
313
Tumor
-0.1
664
Normal
-0.1
213
Tumor
-0.1
352
Normal
-0.1
648
Normal
-0.1
867
Tumor
-0.1
563
Tumor
-0.1
217
Tumor
-0.1
383
Tumor
-0.1
755
Tumor
-0.1
883
Tumor
-0.1
738
Normal
-0.1
1025
Tumor
-0.1
468
Normal
-0.1
672
Normal
-0.1
128
Normal
-0.1
1021
Tumor
-0.1
433
Tumor
-0.1
357
Tumor
-0.1
456
Normal
-0.1
386
Normal
-0.1
344
Normal
-0.1
951
Tumor
-0.1
148
Normal
-0.1
424
Normal
-0.1
312
Normal
-0.1
342
Normal
-0.1
187
Tumor
-0.1
422
Normal
-0.1
953
Tumor
-0.1
327
Tumor
-0.1
387
Tumor
-0.1
278
Normal
-0.1
464
Normal
-0.1
392
Normal
-0.2
647
Tumor
-0.2
573
Tumor
-0.2
423
Tumor
-0.2
426
Normal
-0.2
145
Tumor
-0.2
191
Tumor
-0.2
394
Normal
-0.2
367
Tumor
-0.2
366
Normal
-0.2
391
Tumor
-0.2
376
Normal
-0.2
557
Tumor
-0.2
162
Normal
-0.2
351
Tumor
-0.2
161
Tumor
-0.2
186
Normal
-0.2
567
Tumor
-0.2
483
Tumor
-0.2
231
Tumor
-0.2
172
Normal
-0.2
665
Tumor
-0.2
395
Tumor
-0.2
666
Normal
-0.2
393
Tumor
-0.2
332
Normal
-0.2
314
Normal
-0.2
1013
Tumor
-0.2
384
Normal
-0.2
452
Normal
-0.3
915
Tumor
-0.3
451
Tumor
-0.3
171
Tumor
-0.3
113
Tumor
-0.3
112
Tumor
-0.3
368
Normal
-0.3
361
Tumor
-0.3
685
Tumor
-0.4
571
Tumor
-0.4
477
Tumor
-0.4
123
Tumor
-0.5
465
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
