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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS9D1 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
83.9
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
78.9
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
76.6
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
65.3
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
64.9
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
64.3
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
63.8
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
54.9
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
54.4
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
50.4
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
45.3
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
43.7
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
43.3
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
42.9
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
42.1
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
39.1
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
37.1
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
33.4
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
33.4
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
32.7
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
32.3
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
31.5
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
31.4
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
31.0
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
30.7
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
30.1
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
27.3
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
26.6
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
26.2
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
25.4
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
24.8
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
24.6
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
24.3
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
23.8
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
23.7
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
23.2
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
22.5
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
21.7
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
21.3
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
20.8
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
20.7
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
20.7
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
19.9
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
19.7
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
19.1
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
19.0
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
18.8
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
18.3
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
18.2
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
18.0
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
17.9
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
17.2
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
16.5
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
16.5
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
15.3
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
15.2
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
14.8
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
14.7
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
12.2
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
11.9
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
10.6
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
9.7
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
8.2
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS9D1 is not prognostic in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
521
Samples
Sample
Description
TPM
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
26.6
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
23.5
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
20.8
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
20.2
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
19.8
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
19.8
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
18.8
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
18.5
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
18.2
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
17.8
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
17.7
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
17.6
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
17.5
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
17.1
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
17.0
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
16.9
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
16.7
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
16.6
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
16.2
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
16.2
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
16.0
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
15.5
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
15.5
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
15.3
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
15.1
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
15.1
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
15.1
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
14.9
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
14.8
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
14.6
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
14.6
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
14.6
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
14.6
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
14.2
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
14.2
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
14.1
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
14.0
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
13.9
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
13.9
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
13.8
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
13.8
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
13.6
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
13.6
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
13.5
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
13.5
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
13.5
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
13.2
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
13.2
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
13.1
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
13.1
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
13.0
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
13.0
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
13.0
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
13.0
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
13.0
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
12.9
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
12.8
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
12.8
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
12.8
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
12.7
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
12.6
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
12.6
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
12.6
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
12.6
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
12.5
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
12.5
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
12.5
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
12.5
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
12.4
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
12.4
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
12.4
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
12.3
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
12.3
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
12.2
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
12.2
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
12.2
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
12.2
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
12.2
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
12.2
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
12.1
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
12.1
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
12.1
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
12.1
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
12.1
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
12.1
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
12.0
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
12.0
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
12.0
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
12.0
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
12.0
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
11.9
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
11.9
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
11.9
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
11.9
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
11.9
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
11.9
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
11.9
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
11.9
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
11.8
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
11.8
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
11.7
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
11.7
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
11.7
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
11.7
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
11.7
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
11.7
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
11.7
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
11.6
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
11.6
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
11.6
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
11.6
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
11.6
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
11.6
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
11.5
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
11.5
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
11.5
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
11.5
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
11.4
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
11.4
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
11.4
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
11.4
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
11.4
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
11.4
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
11.3
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
11.3
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
11.3
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
11.3
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
11.3
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
11.2
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
11.2
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
11.2
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
11.2
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
11.1
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
11.1
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
11.1
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
11.1
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
11.1
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
11.1
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
11.0
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
11.0
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
10.9
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
10.9
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
10.9
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
10.8
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
10.8
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
10.8
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
10.8
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
10.8
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
10.7
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
10.7
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
10.7
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
10.6
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
10.6
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
10.5
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
10.5
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
10.5
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
10.5
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
10.5
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
10.5
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
10.5
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
10.4
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
10.4
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
10.4
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
10.4
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
10.3
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
10.3
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
10.3
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
10.3
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
10.3
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
10.2
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
10.2
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
10.2
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
10.2
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
10.1
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
10.1
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
10.1
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
10.1
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
10.1
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
10.1
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
10.1
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
10.1
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
10.0
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
10.0
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
10.0
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
9.9
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
9.9
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
9.9
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
9.9
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
9.9
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
9.9
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
9.8
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
9.8
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
9.8
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
9.7
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
9.7
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
9.6
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
9.6
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
9.6
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
9.5
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
9.5
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
9.5
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
9.5
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
9.5
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
9.5
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
9.4
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
9.4
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
9.4
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
9.4
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
9.4
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
9.4
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
9.4
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
9.3
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
9.3
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
9.3
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
9.3
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
9.3
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
9.3
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
9.2
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
9.2
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
9.2
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
9.2
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
9.2
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
9.1
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
9.1
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
9.1
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
9.1
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
9.1
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
9.0
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
9.0
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
9.0
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
9.0
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
8.9
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
8.9
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
8.9
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
8.9
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
8.9
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
8.9
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
8.8
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
8.8
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
8.8
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
8.8
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
8.8
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
8.8
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
8.7
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
8.7
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
8.7
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
8.7
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
8.7
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
8.7
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
8.7
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
8.6
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
8.6
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
8.6
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
8.6
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
8.6
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
8.5
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
8.5
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
8.5
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
8.5
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
8.5
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
8.5
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
8.5
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
8.5
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
8.4
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
8.4
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
8.3
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
8.3
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
8.3
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
8.3
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
8.2
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
8.2
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
8.2
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
8.2
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
8.1
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
8.1
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
8.1
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
8.1
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
8.1
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
8.0
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
8.0
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
8.0
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
8.0
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
8.0
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
7.9
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
7.9
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
7.9
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
7.8
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
7.8
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
7.8
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
7.8
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
7.8
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
7.8
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
7.8
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
7.7
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
7.7
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
7.7
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
7.7
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
7.7
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
7.7
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
7.7
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
7.7
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
7.7
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
7.7
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
7.7
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
7.7
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
7.7
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
7.6
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
7.6
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
7.6
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
7.6
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
7.6
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
7.6
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
7.6
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
7.5
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
7.5
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
7.5
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
7.5
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
7.5
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
7.5
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
7.5
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
7.4
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
7.4
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
7.4
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
7.4
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
7.4
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
7.4
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
7.4
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
7.4
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
7.3
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
7.3
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
7.3
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
7.3
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
7.2
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
7.2
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
7.2
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
7.2
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
7.2
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
7.2
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
7.1
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
7.1
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
7.1
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
7.1
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
7.1
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
7.1
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
7.1
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
7.0
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
7.0
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
7.0
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
7.0
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
7.0
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
7.0
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
7.0
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
7.0
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
6.9
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
6.9
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
6.9
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
6.9
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
6.9
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
6.9
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
6.9
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
6.9
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
6.8
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
6.8
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
6.8
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
6.8
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
6.8
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
6.8
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
6.7
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
6.7
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
6.7
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
6.6
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
6.6
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
6.6
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
6.6
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
6.6
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
6.6
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
6.5
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
6.5
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
6.5
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
6.5
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
6.5
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
6.5
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
6.4
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
6.4
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
6.4
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
6.4
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
6.4
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
6.4
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
6.4
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
6.4
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
6.4
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
6.4
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
6.4
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
6.3
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
6.3
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
6.3
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
6.2
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
6.2
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
6.2
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
6.2
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
6.2
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
6.2
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
6.2
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
6.2
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
6.2
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
6.2
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
6.2
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
6.1
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
6.1
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
6.1
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
6.1
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
6.1
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
6.1
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
6.1
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
6.0
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
6.0
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
6.0
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
5.9
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
5.9
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
5.9
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
5.9
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
5.9
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
5.9
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
5.9
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
5.9
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
5.9
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
5.8
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
5.8
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
5.8
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
5.8
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
5.8
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
5.7
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
5.7
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
5.7
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
5.7
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
5.7
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
5.6
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
5.6
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
5.6
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
5.6
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
5.6
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
5.5
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
5.5
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
5.5
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
5.5
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
5.5
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
5.4
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
5.4
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
5.4
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
5.3
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
5.3
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
5.3
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
5.3
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
5.3
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
5.2
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
5.2
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
5.2
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
5.2
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
5.2
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
5.2
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
5.2
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
5.2
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
5.1
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
5.1
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
5.1
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
5.1
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
5.1
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
5.0
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
5.0
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
5.0
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
5.0
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
5.0
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
5.0
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
5.0
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
4.9
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
4.9
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
4.8
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
4.7
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
4.7
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
4.6
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
4.6
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
4.6
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
4.5
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
4.5
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
4.5
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
4.5
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
4.4
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
4.4
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
4.3
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
4.2
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
4.2
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
4.1
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
4.1
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
4.1
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
4.0
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
3.9
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
3.8
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
3.8
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
3.7
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
3.7
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
3.7
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
3.7
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
3.7
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
3.5
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
3.5
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
3.5
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
3.4
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
3.3
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
3.1
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
3.0
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
3.0
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
3.0
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
2.7
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
2.7
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
2.6
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
2.6
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
2.5
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
1.7
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
1.0
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
1.0
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS9D1 is potential prognostic, high expression is unfavorable in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
25.1
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
20.7
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
19.1
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
18.1
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
17.2
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
17.1
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
16.9
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
16.9
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
16.7
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
16.5
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
16.4
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
16.3
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
16.1
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
16.0
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
16.0
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
15.9
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
15.8
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
15.8
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
14.9
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
14.8
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
14.7
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
14.6
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
14.6
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
14.0
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
13.7
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
13.4
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
13.4
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
13.3
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
13.2
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
13.2
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
13.2
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
13.1
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
13.1
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
13.1
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
13.1
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
13.0
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
12.8
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
12.8
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
12.7
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
12.7
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
12.7
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
12.6
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
12.6
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
12.4
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
12.3
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
12.2
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
12.1
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
12.0
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
11.8
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
11.7
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
11.6
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
11.5
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
11.4
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
11.4
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
11.3
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
11.2
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
11.1
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
11.0
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
11.0
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
11.0
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
10.9
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
10.9
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
10.8
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
10.6
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
10.6
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
10.6
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
10.5
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
10.5
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
10.5
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
10.4
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
10.2
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
10.2
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
10.2
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
10.1
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
10.1
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
10.0
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
9.8
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
9.7
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
9.5
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
9.5
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
9.4
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
9.4
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
9.3
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
9.0
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
8.9
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
8.8
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
8.5
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
8.5
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
8.5
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
7.8
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
6.9
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
6.8
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
6.4
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
5.7
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
5.6
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
5.3
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
4.3
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
4.1
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
3.6
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VPS9D1 is potential prognostic, high expression is favorable in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.8
Number of samples
282
Samples
Sample
Description
TPM
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
116.5
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
93.2
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
90.7
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
82.9
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
81.2
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
74.2
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
70.7
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
68.7
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
68.0
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
62.1
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
61.1
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
59.1
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
58.6
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
56.3
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
53.8
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
52.1
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
51.8
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
51.6
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
51.6
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
49.9
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
47.9
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
47.8
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
47.2
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
46.5
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
44.8
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
44.8
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
44.2
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
43.6
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
42.6
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
42.1
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
41.3
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
40.5
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
40.3
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
39.9
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
39.3
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
38.9
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
38.3
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
38.2
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
38.0
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
37.6
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.5
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
37.3
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
36.5
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
36.5
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
36.3
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
36.1
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
36.0
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
35.2
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
34.9
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
34.7
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
34.4
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
33.5
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
33.5
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
32.9
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
32.9
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
32.8
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
32.3
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
32.3
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
32.0
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
31.8
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
31.6
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
31.5
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
31.3
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
31.2
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
31.2
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
30.5
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
30.4
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
30.4
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
30.1
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
30.1
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
30.1
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
30.0
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
30.0
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
29.3
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
29.0
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
28.9
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
28.7
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
28.6
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
28.6
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
28.6
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
28.5
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
28.2
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
27.9
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
27.8
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
27.4
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
27.3
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
26.9
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
26.9
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
26.9
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
26.8
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
26.6
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
26.5
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
26.4
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
26.4
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
26.3
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
26.2
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
26.2
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
26.0
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
25.8
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
25.4
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
25.2
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
25.2
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
25.2
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
25.2
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
24.9
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
24.7
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
24.6
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
24.3
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
24.1
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
24.0
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
23.7
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
23.6
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
23.5
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
23.4
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
23.2
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
23.1
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
22.8
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
22.8
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
22.7
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
22.7
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
22.6
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
22.4
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
22.3
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
22.3
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
22.3
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
22.3
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
22.3
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
22.2
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
22.2
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
22.2
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
22.2
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
22.1
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
22.1
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
21.8
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
21.8
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
21.6
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
21.6
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
21.4
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
21.3
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
21.2
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
21.2
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
21.0
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
20.9
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
20.9
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
20.8
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
20.7
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
20.7
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
20.5
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
20.5
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
20.4
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
20.3
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
20.2
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
20.2
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
19.7
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
19.6
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
19.6
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
19.5
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
19.5
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
19.5
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
19.4
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
19.2
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
19.2
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
18.9
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
18.9
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
18.5
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
18.4
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
18.3
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
18.3
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
18.3
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
18.2
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
18.2
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
18.2
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
18.1
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
18.0
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
18.0
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
17.9
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
17.9
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
17.7
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
17.6
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
17.3
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
17.1
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
17.1
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
17.1
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
17.0
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.0
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
16.9
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
16.9
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
16.9
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
16.8
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
16.8
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
16.7
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
16.7
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
16.6
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
16.5
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
16.4
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
16.4
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
16.4
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
16.2
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
16.1
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
16.1
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
16.1
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
16.0
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
15.6
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
15.5
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
15.3
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
15.3
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
15.2
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
15.2
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
15.1
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
15.1
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
15.0
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
15.0
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
15.0
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
15.0
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
15.0
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
14.9
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
14.7
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
14.6
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
14.6
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
14.5
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
14.4
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
14.3
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.3
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
14.3
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
14.1
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
14.0
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
13.9
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
13.8
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
13.7
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
13.6
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
13.6
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
13.5
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
13.3
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
13.2
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
13.2
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
13.1
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
13.0
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
12.9
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
12.9
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
12.7
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
12.6
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
12.5
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
12.5
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
12.1
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
11.8
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
11.8
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
11.6
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
11.4
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
11.4
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
11.3
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
11.3
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
11.0
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
10.7
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
10.4
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
10.4
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
10.4
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
10.3
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
10.3
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
10.2
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
10.2
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
10.1
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
9.9
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
9.7
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
9.7
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
9.6
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
9.4
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
9.0
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
8.8
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
8.4
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
8.2
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
8.1
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
7.9
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
7.7
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
7.5
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
7.1
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
7.0
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
6.3
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
6.0
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
5.2
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
4.7
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
4.7
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
4.4
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RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0025290003
Tumor
2.1
CPT0078510003
Tumor
1.6
CPT0025170003
Tumor
1.3
CPT0020120003
Tumor
1.0
CPT0089460004
Tumor
0.9
CPT0066470004
Tumor
0.9
CPT0065690003
Tumor
0.8
CPT0081880003
Tumor
0.8
CPT0092190003
Normal
0.8
CPT0078660003
Tumor
0.8
CPT0077310003
Tumor
0.7
CPT0001500009
Tumor
0.7
CPT0078930003
Tumor
0.7
CPT0019990003
Tumor
0.7
CPT0086970003
Normal
0.7
CPT0077110003
Tumor
0.7
CPT0076330003
Tumor
0.7
CPT0007860003
Tumor
0.6
CPT0002270011
Tumor
0.6
CPT0063320003
Tumor
0.6
CPT0065930003
Tumor
0.6
CPT0065810003
Tumor
0.5
CPT0012670003
Tumor
0.5
CPT0006630003
Tumor
0.5
CPT0010160003
Tumor
0.4
CPT0092730003
Tumor
0.4
CPT0015730003
Tumor
0.4
CPT0012080003
Tumor
0.4
CPT0088500001
Normal
0.4
CPT0023710001
Normal
0.4
CPT0078840001
Normal
0.4
CPT0006900003
Tumor
0.4
CPT0063330001
Normal
0.3
CPT0092160003
Tumor
0.3
CPT0092790003
Tumor
0.3
CPT0086890003
Normal
0.3
CPT0088760003
Tumor
0.3
CPT0065750003
Tumor
0.3
CPT0086030003
Tumor
0.3
CPT0006950001
Normal
0.3
CPT0078670001
Normal
0.3
CPT0078800003
Tumor
0.3
CPT0069160003
Tumor
0.2
CPT0015810003
Tumor
0.2
CPT0078830003
Tumor
0.2
CPT0001190001
Normal
0.2
CPT0015910003
Tumor
0.2
CPT0010170001
Normal
0.2
CPT0025230003
Tumor
0.2
CPT0011410003
Tumor
0.2
CPT0081990003
Tumor
0.2
CPT0020130001
Normal
0.2
CPT0017850003
Tumor
0.2
CPT0006440003
Tumor
0.2
CPT0064370003
Tumor
0.2
CPT0001260009
Tumor
0.2
CPT0079230003
Tumor
0.2
CPT0023350003
Tumor
0.2
CPT0079270003
Tumor
0.2
CPT0086950003
Tumor
0.2
CPT0012640003
Normal
0.2
CPT0077500001
Normal
0.2
CPT0082010001
Normal
0.1
CPT0064400001
Normal
0.1
CPT0079380003
Tumor
0.1
CPT0092800003
Normal
0.1
CPT0014470001
Normal
0.1
CPT0088710001
Normal
0.1
CPT0069190001
Normal
0.1
CPT0087050003
Normal
0.1
CPT0075570001
Normal
0.1
CPT0088920001
Normal
0.1
CPT0025610001
Normal
0.1
CPT0020020001
Normal
0.1
CPT0086360003
Tumor
0.1
CPT0069010001
Normal
0.1
CPT0001340003
Tumor
0.1
CPT0069000003
Tumor
0.1
CPT0000870016
Tumor
0.1
CPT0014450004
Tumor
0.1
CPT0085670003
Tumor
0.1
CPT0025920001
Normal
0.0
CPT0063640001
Normal
0.0
CPT0023360001
Normal
0.0
CPT0001350001
Normal
0.0
CPT0001180009
Tumor
0.0
CPT0077490003
Tumor
0.0
CPT0088690003
Tumor
0.0
CPT0007470001
Normal
0.0
CPT0077140001
Normal
0.0
CPT0077320001
Normal
0.0
CPT0010120001
Normal
0.0
CPT0000890001
Normal
0.0
CPT0006730001
Normal
0.0
CPT0014350001
Normal
0.0
CPT0086370003
Normal
0.0
CPT0089480003
Normal
0.0
CPT0087040003
Tumor
0.0
CPT0092740003
Normal
0.0
CPT0012280003
Tumor
0.0
CPT0026420001
Normal
-0.1
CPT0086830003
Normal
-0.1
CPT0076350001
Normal
-0.1
CPT0063630003
Tumor
-0.1
CPT0075130003
Tumor
-0.1
CPT0088570001
Normal
-0.1
CPT0025580004
Tumor
-0.1
CPT0010110003
Tumor
-0.1
CPT0002350011
Tumor
-0.1
CPT0025880003
Tumor
-0.1
CPT0023690003
Tumor
-0.1
CPT0078940001
Normal
-0.1
CPT0079300001
Normal
-0.1
CPT0088640003
Normal
-0.1
CPT0066430001
Normal
-0.1
CPT0012290003
Normal
-0.1
CPT0088480003
Tumor
-0.1
CPT0025110003
Tumor
-0.2
CPT0086870003
Tumor
-0.2
CPT0079000001
Normal
-0.2
CPT0018250001
Normal
-0.2
CPT0081620001
Normal
-0.2
CPT0006530001
Normal
-0.2
CPT0002370001
Normal
-0.2
CPT0078530001
Normal
-0.2
CPT0019160001
Normal
-0.2
CPT0065820001
Normal
-0.2
CPT0001270001
Normal
-0.2
CPT0079410003
Tumor
-0.2
CPT0007870001
Normal
-0.2
CPT0001510001
Normal
-0.2
CPT0012090003
Normal
-0.2
CPT0075170001
Normal
-0.2
CPT0065870003
Tumor
-0.2
CPT0089040001
Normal
-0.2
CPT0014370004
Tumor
-0.2
CPT0088550004
Tumor
-0.2
CPT0088900003
Tumor
-0.2
CPT0079510001
Normal
-0.2
CPT0079430001
Normal
-0.3
CPT0084590001
Normal
-0.3
CPT0084560003
Tumor
-0.3
CPT0086820003
Tumor
-0.3
CPT0088970003
Tumor
-0.3
CPT0079480003
Tumor
-0.3
CPT0075720003
Tumor
-0.3
CPT0089020003
Tumor
-0.3
CPT0075560003
Tumor
-0.3
CPT0088780001
Normal
-0.3
CPT0026410003
Tumor
-0.4
CPT0078990003
Tumor
-0.4
CPT0000640003
Tumor
-0.4
CPT0025350003
Tumor
-0.4
CPT0019130003
Tumor
-0.4
CPT0081600003
Tumor
-0.4
CPT0012180003
Tumor
-0.4
CPT0007320003
Tumor
-0.5
CPT0000660001
Normal
-0.5
CPT0088630003
Tumor
-0.6
CPT0000790001
Normal
N/A
CPT0011240003
Tumor
N/A
CPT0012920003
Normal
N/A
CPT0024670003
Tumor
N/A
CPT0021240003
Tumor
N/A
CPT0071150004
Tumor
N/A
CPT0066480003
Tumor
N/A
CPT0025050003
Tumor
N/A
CPT0012570003
Normal
N/A
CPT0012900004
Tumor
N/A
CPT0000780007
Tumor
N/A
CPT0092290003
Tumor
N/A
CPT0001550001
Normal
N/A
CPT0079180003
Tumor
N/A
CPT0009000003
Tumor
N/A
CPT0024680001
Normal
N/A
CPT0009020003
Normal
N/A
CPT0014160003
Tumor
N/A
CPT0066520001
Normal
N/A
CPT0012770003
Normal
N/A
CPT0017410003
Tumor
N/A
CPT0014130001
Normal
N/A
CPT0065450001
Normal
N/A
CPT0012550003
Tumor
N/A
CPT0017450001
Normal
N/A
CPT0092310003
Normal
N/A
CPT0065430003
Tumor
N/A
CPT0012370003
Tumor
N/A
CPT0009080003
Normal
N/A
CPT0001230001
Normal
N/A
CPT0001540009
Tumor
N/A
CPT0013790003
Normal
N/A
CPT0009060003
Tumor
N/A
CPT0001220008
Tumor
N/A
CPT0025060001
Normal
N/A
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
