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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM21 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
513
Tumor
1.5
727
Tumor
1.2
925
Tumor
1.1
937
Tumor
1.1
1041
Tumor
0.9
923
Tumor
0.9
517
Tumor
0.9
487
Tumor
0.8
1025
Tumor
0.8
873
Tumor
0.8
755
Tumor
0.8
911
Tumor
0.8
393
Tumor
0.8
465
Tumor
0.8
915
Tumor
0.8
615
Tumor
0.8
957
Tumor
0.7
1045
Tumor
0.7
341
Tumor
0.7
635
Tumor
0.7
823
Tumor
0.7
967
Tumor
0.7
921
Tumor
0.7
573
Tumor
0.6
981
Tumor
0.6
477
Tumor
0.6
557
Tumor
0.6
647
Tumor
0.6
227
Tumor
0.6
563
Tumor
0.6
553
Tumor
0.6
483
Tumor
0.6
425
Tumor
0.6
537
Tumor
0.6
515
Tumor
0.6
267
Tumor
0.5
423
Tumor
0.5
493
Tumor
0.5
161
Tumor
0.5
922
Normal
0.5
231
Tumor
0.5
1043
Tumor
0.5
461
Tumor
0.5
695
Tumor
0.5
1013
Tumor
0.5
953
Tumor
0.4
924
Normal
0.4
451
Tumor
0.4
785
Tumor
0.4
361
Tumor
0.4
713
Tumor
0.4
514
Normal
0.4
491
Tumor
0.4
443
Tumor
0.4
112
Tumor
0.4
913
Tumor
0.4
363
Tumor
0.4
257
Tumor
0.4
484
Normal
0.4
313
Tumor
0.4
527
Tumor
0.3
571
Tumor
0.3
1021
Tumor
0.3
113
Tumor
0.3
494
Normal
0.3
533
Tumor
0.3
1015
Tumor
0.3
564
Normal
0.3
944
Normal
0.3
665
Tumor
0.3
1032
Normal
0.3
412
Normal
0.3
523
Tumor
0.3
452
Normal
0.3
786
Normal
0.3
1014
Normal
0.3
546
Normal
0.3
145
Tumor
0.3
427
Tumor
0.3
445
Tumor
0.3
777
Tumor
0.3
426
Normal
0.3
383
Tumor
0.3
984
Normal
0.3
1042
Normal
0.3
535
Tumor
0.3
862
Normal
0.2
567
Tumor
0.2
488
Normal
0.2
127
Tumor
0.2
698
Normal
0.2
954
Normal
0.2
524
Normal
0.2
866
Normal
0.2
526
Normal
0.2
756
Normal
0.2
481
Tumor
0.2
813
Tumor
0.2
421
Tumor
0.2
482
Normal
0.2
518
Normal
0.2
534
Normal
0.2
636
Normal
0.2
1027
Tumor
0.2
863
Tumor
0.2
864
Normal
0.2
367
Tumor
0.2
525
Tumor
0.2
815
Tumor
0.2
448
Normal
0.2
926
Normal
0.2
723
Tumor
0.2
824
Normal
0.2
212
Normal
0.2
462
Normal
0.2
745
Tumor
0.2
648
Normal
0.2
1026
Normal
0.2
356
Normal
0.2
882
Normal
0.2
746
Normal
0.2
568
Normal
0.2
964
Normal
0.1
424
Normal
0.1
415
Tumor
0.1
983
Tumor
0.1
938
Normal
0.1
123
Tumor
0.1
328
Normal
0.1
686
Normal
0.1
258
Normal
0.1
528
Normal
0.1
1022
Normal
0.1
472
Normal
0.1
916
Normal
0.1
867
Tumor
0.1
394
Normal
0.1
955
Tumor
0.1
572
Normal
0.1
391
Tumor
0.1
663
Tumor
0.1
982
Normal
0.1
436
Normal
0.1
298
Normal
0.1
818
Normal
0.1
416
Normal
0.1
696
Normal
0.1
918
Normal
0.1
858
Normal
0.1
914
Normal
0.1
554
Normal
0.1
1046
Normal
0.1
852
Normal
0.1
558
Normal
0.1
1028
Normal
0.1
715
Tumor
0.1
191
Tumor
0.1
958
Normal
0.1
912
Normal
0.1
883
Tumor
0.1
428
Normal
0.1
376
Normal
0.1
162
Normal
0.0
228
Normal
0.0
978
Normal
0.0
314
Normal
0.0
851
Tumor
0.0
664
Normal
0.0
722
Normal
0.0
714
Normal
0.0
1016
Normal
0.0
172
Normal
0.0
966
Normal
0.0
884
Normal
0.0
135
Tumor
0.0
492
Normal
0.0
171
Tumor
0.0
284
Normal
0.0
721
Tumor
0.0
364
Normal
0.0
354
Normal
0.0
232
Normal
0.0
1044
Normal
0.0
968
Normal
0.0
327
Tumor
0.0
286
Normal
0.0
516
Normal
0.0
617
Tumor
0.0
141
Tumor
0.0
355
Tumor
0.0
878
Normal
0.0
857
Tumor
0.0
728
Normal
0.0
618
Normal
0.0
642
Normal
0.0
187
Tumor
0.0
137
Tumor
0.0
1031
Tumor
-0.1
497
Tumor
-0.1
433
Tumor
-0.1
464
Normal
-0.1
414
Normal
-0.1
716
Normal
-0.1
125
Tumor
-0.1
148
Normal
-0.1
353
Tumor
-0.1
351
Tumor
-0.1
332
Normal
-0.1
538
Normal
-0.1
778
Normal
-0.1
868
Normal
-0.1
628
Normal
-0.1
285
Tumor
-0.1
446
Normal
-0.1
468
Normal
-0.1
741
Tumor
-0.1
261
Tumor
-0.1
666
Normal
-0.1
861
Tumor
-0.1
142
Normal
-0.1
357
Tumor
-0.1
956
Normal
-0.1
342
Normal
-0.1
411
Tumor
-0.1
213
Tumor
-0.1
138
Normal
-0.1
214
Normal
-0.1
574
Normal
-0.1
616
Normal
-0.1
738
Normal
-0.1
278
Normal
-0.1
344
Normal
-0.1
196
Normal
-0.1
952
Normal
-0.1
662
Normal
-0.1
976
Normal
-0.1
816
Normal
-0.1
432
Normal
-0.1
456
Normal
-0.1
874
Normal
-0.2
422
Normal
-0.2
385
Tumor
-0.2
466
Normal
-0.2
358
Normal
-0.2
392
Normal
-0.2
865
Tumor
-0.2
222
Normal
-0.2
128
Normal
-0.2
262
Normal
-0.2
365
Tumor
-0.2
366
Normal
-0.2
224
Normal
-0.2
297
Tumor
-0.2
268
Normal
-0.2
272
Normal
-0.2
136
Normal
-0.2
186
Normal
-0.2
362
Normal
-0.2
352
Normal
-0.2
697
Tumor
-0.2
312
Normal
-0.2
951
Tumor
-0.2
111
Normal
-0.2
744
Normal
-0.2
114
Normal
-0.2
185
Tumor
-0.2
977
Tumor
-0.2
536
Normal
-0.2
672
Normal
-0.2
124
Normal
-0.3
478
Normal
-0.3
474
Normal
-0.3
742
Normal
-0.3
737
Tumor
-0.3
368
Normal
-0.3
743
Tumor
-0.3
413
Tumor
-0.3
388
Normal
-0.3
384
Normal
-0.3
218
Normal
-0.3
498
Normal
-0.3
396
Normal
-0.3
211
Tumor
-0.3
431
Tumor
-0.3
386
Normal
-0.3
685
Tumor
-0.3
943
Tumor
-0.3
195
Tumor
-0.3
221
Tumor
-0.3
146
Normal
-0.3
814
Normal
-0.4
132
Normal
-0.4
434
Normal
-0.4
467
Tumor
-0.4
375
Tumor
-0.4
188
Normal
-0.4
395
Tumor
-0.4
471
Tumor
-0.4
545
Tumor
-0.4
444
Normal
-0.4
387
Tumor
-0.4
473
Tumor
-0.5
126
Normal
-0.5
965
Tumor
-0.5
963
Tumor
-0.5
447
Tumor
-0.5
671
Tumor
-0.5
975
Tumor
-0.5
311
Tumor
-0.5
435
Tumor
-0.6
217
Tumor
-0.6
661
Tumor
-0.6
192
Normal
-0.6
223
Tumor
-0.6
463
Tumor
-0.6
277
Tumor
-0.7
724
Normal
-0.7
917
Tumor
-0.7
455
Tumor
-0.7
817
Tumor
-0.8
271
Tumor
-0.8
881
Tumor
-0.8
283
Tumor
-0.9
641
Tumor
-0.9
331
Tumor
-1.0
147
Tumor
-1.0
343
Tumor
-1.0
877
Tumor
-1.1
131
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
