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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRI is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
223.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
164.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
160.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
148.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
131.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
126.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
109.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
107.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
102.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
99.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
98.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
97.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
81.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
79.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
77.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
77.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
74.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
73.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
73.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
73.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
73.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
72.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
72.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
70.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
69.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
68.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
68.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
67.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
66.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
65.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
62.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
62.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
60.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
60.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
60.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
57.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
56.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
54.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
51.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
50.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
49.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
49.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
48.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
47.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
47.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
46.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
46.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
45.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
44.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
44.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
43.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
41.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
41.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
40.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
37.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
36.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
36.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
36.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
36.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
35.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
34.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
33.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
33.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
33.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
32.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
32.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
28.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
28.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
25.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
25.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
25.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
23.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
22.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
20.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SRI is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
140.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
84.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
76.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
75.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
67.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
66.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
57.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
53.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
49.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
45.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
42.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
41.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
36.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
36.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
1.9
1013
Tumor
1.1
413
Tumor
1.1
223
Tumor
1.0
917
Tumor
1.0
351
Tumor
0.9
663
Tumor
0.8
311
Tumor
0.8
353
Tumor
0.7
363
Tumor
0.7
192
Normal
0.7
483
Tumor
0.7
463
Tumor
0.6
211
Tumor
0.6
851
Tumor
0.6
445
Tumor
0.6
527
Tumor
0.6
745
Tumor
0.5
431
Tumor
0.5
195
Tumor
0.5
385
Tumor
0.5
213
Tumor
0.5
383
Tumor
0.5
331
Tumor
0.5
423
Tumor
0.5
285
Tumor
0.4
737
Tumor
0.4
661
Tumor
0.4
815
Tumor
0.4
857
Tumor
0.4
137
Tumor
0.4
967
Tumor
0.4
965
Tumor
0.3
147
Tumor
0.3
187
Tumor
0.3
135
Tumor
0.3
744
Normal
0.3
491
Tumor
0.3
535
Tumor
0.3
224
Normal
0.3
444
Normal
0.3
727
Tumor
0.3
877
Tumor
0.3
361
Tumor
0.3
863
Tumor
0.3
313
Tumor
0.3
957
Tumor
0.2
447
Tumor
0.2
386
Normal
0.2
685
Tumor
0.2
146
Normal
0.2
352
Normal
0.2
391
Tumor
0.2
778
Normal
0.2
672
Normal
0.2
865
Tumor
0.2
221
Tumor
0.2
724
Normal
0.2
538
Normal
0.2
415
Tumor
0.2
344
Normal
0.2
434
Normal
0.2
536
Normal
0.2
185
Tumor
0.2
513
Tumor
0.1
191
Tumor
0.1
327
Tumor
0.1
1027
Tumor
0.1
635
Tumor
0.1
545
Tumor
0.1
1015
Tumor
0.1
573
Tumor
0.1
498
Normal
0.1
492
Normal
0.1
217
Tumor
0.1
455
Tumor
0.1
261
Tumor
0.1
355
Tumor
0.1
823
Tumor
0.1
171
Tumor
0.1
312
Normal
0.1
387
Tumor
0.1
881
Tumor
0.1
384
Normal
0.1
362
Normal
0.1
662
Normal
0.1
816
Normal
0.1
1043
Tumor
0.1
268
Normal
0.1
424
Normal
0.1
515
Tumor
0.1
428
Normal
0.1
427
Tumor
0.1
665
Tumor
0.1
647
Tumor
0.1
126
Normal
0.1
262
Normal
0.0
813
Tumor
0.0
755
Tumor
0.0
814
Normal
0.0
141
Tumor
0.0
342
Normal
0.0
493
Tumor
0.0
478
Normal
0.0
721
Tumor
0.0
467
Tumor
0.0
722
Normal
0.0
214
Normal
0.0
212
Normal
0.0
188
Normal
0.0
343
Tumor
0.0
414
Normal
0.0
218
Normal
0.0
852
Normal
0.0
777
Tumor
0.0
818
Normal
0.0
393
Tumor
0.0
697
Tumor
0.0
554
Normal
0.0
283
Tumor
0.0
368
Normal
0.0
297
Tumor
0.0
913
Tumor
0.0
396
Normal
0.0
367
Tumor
0.0
956
Normal
0.0
867
Tumor
0.0
923
Tumor
-0.1
131
Tumor
-0.1
686
Normal
-0.1
723
Tumor
-0.1
918
Normal
-0.1
161
Tumor
-0.1
516
Normal
-0.1
1028
Normal
-0.1
874
Normal
-0.1
278
Normal
-0.1
354
Normal
-0.1
364
Normal
-0.1
1014
Normal
-0.1
461
Tumor
-0.1
1044
Normal
-0.1
446
Normal
-0.1
228
Normal
-0.1
952
Normal
-0.1
125
Tumor
-0.1
375
Tumor
-0.1
627
Tumor
-0.1
474
Normal
-0.1
574
Normal
-0.1
983
Tumor
-0.1
443
Tumor
-0.1
968
Normal
-0.1
916
Normal
-0.1
984
Normal
-0.1
526
Normal
-0.1
878
Normal
-0.1
366
Normal
-0.1
975
Tumor
-0.1
557
Tumor
-0.1
738
Normal
-0.1
1021
Tumor
-0.1
227
Tumor
-0.1
664
Normal
-0.1
911
Tumor
-0.1
358
Normal
-0.1
642
Normal
-0.2
924
Normal
-0.2
546
Normal
-0.2
196
Normal
-0.2
937
Tumor
-0.2
272
Normal
-0.2
558
Normal
-0.2
953
Tumor
-0.2
365
Tumor
-0.2
388
Normal
-0.2
138
Normal
-0.2
124
Normal
-0.2
451
Tumor
-0.2
487
Tumor
-0.2
298
Normal
-0.2
524
Normal
-0.2
422
Normal
-0.2
1022
Normal
-0.2
394
Normal
-0.2
123
Tumor
-0.2
472
Normal
-0.2
497
Tumor
-0.2
861
Tumor
-0.2
868
Normal
-0.2
132
Normal
-0.2
145
Tumor
-0.2
392
Normal
-0.2
142
Normal
-0.2
464
Normal
-0.2
966
Normal
-0.2
1042
Normal
-0.2
284
Normal
-0.2
716
Normal
-0.2
222
Normal
-0.3
525
Tumor
-0.3
866
Normal
-0.3
113
Tumor
-0.3
456
Normal
-0.3
136
Normal
-0.3
982
Normal
-0.3
421
Tumor
-0.3
976
Normal
-0.3
1026
Normal
-0.3
232
Normal
-0.3
426
Normal
-0.3
628
Normal
-0.3
741
Tumor
-0.3
616
Normal
-0.3
746
Normal
-0.3
824
Normal
-0.3
958
Normal
-0.3
926
Normal
-0.3
1032
Normal
-0.3
696
Normal
-0.3
488
Normal
-0.3
955
Tumor
-0.3
432
Normal
-0.3
328
Normal
-0.3
954
Normal
-0.3
728
Normal
-0.3
914
Normal
-0.3
473
Tumor
-0.3
786
Normal
-0.3
448
Normal
-0.3
258
Normal
-0.3
416
Normal
-0.3
1016
Normal
-0.3
433
Tumor
-0.3
666
Normal
-0.3
332
Normal
-0.3
412
Normal
-0.3
494
Normal
-0.3
615
Tumor
-0.3
286
Normal
-0.3
648
Normal
-0.4
915
Tumor
-0.4
563
Tumor
-0.4
943
Tumor
-0.4
978
Normal
-0.4
468
Normal
-0.4
713
Tumor
-0.4
148
Normal
-0.4
938
Normal
-0.4
518
Normal
-0.4
862
Normal
-0.4
356
Normal
-0.4
618
Normal
-0.4
186
Normal
-0.4
572
Normal
-0.4
864
Normal
-0.4
111
Normal
-0.4
884
Normal
-0.4
756
Normal
-0.4
471
Tumor
-0.4
742
Normal
-0.4
977
Tumor
-0.4
785
Tumor
-0.4
162
Normal
-0.4
314
Normal
-0.4
376
Normal
-0.4
568
Normal
-0.4
341
Tumor
-0.4
277
Tumor
-0.5
636
Normal
-0.5
462
Normal
-0.5
714
Normal
-0.5
564
Normal
-0.5
817
Tumor
-0.5
571
Tumor
-0.5
514
Normal
-0.5
114
Normal
-0.5
484
Normal
-0.5
482
Normal
-0.5
112
Tumor
-0.5
1046
Normal
-0.5
528
Normal
-0.5
882
Normal
-0.5
172
Normal
-0.5
1031
Tumor
-0.5
963
Tumor
-0.5
671
Tumor
-0.5
466
Normal
-0.6
452
Normal
-0.6
944
Normal
-0.6
267
Tumor
-0.6
873
Tumor
-0.6
698
Normal
-0.6
922
Normal
-0.6
436
Normal
-0.6
534
Normal
-0.6
964
Normal
-0.6
537
Tumor
-0.6
925
Tumor
-0.6
981
Tumor
-0.6
1045
Tumor
-0.6
435
Tumor
-0.6
617
Tumor
-0.6
127
Tumor
-0.7
395
Tumor
-0.7
858
Normal
-0.7
257
Tumor
-0.7
465
Tumor
-0.7
411
Tumor
-0.7
912
Normal
-0.7
553
Tumor
-0.8
641
Tumor
-0.8
517
Tumor
-0.8
883
Tumor
-0.8
128
Normal
-0.8
715
Tumor
-0.9
481
Tumor
-0.9
1041
Tumor
-1.0
743
Tumor
-1.0
921
Tumor
-1.0
357
Tumor
-1.0
1025
Tumor
-1.0
231
Tumor
-1.1
695
Tumor
-1.1
271
Tumor
-1.3
951
Tumor
-1.3
567
Tumor
-1.4
533
Tumor
-1.6
523
Tumor
-1.6
477
Tumor
-1.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
