We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CA12 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
89.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
80.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
73.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
70.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
68.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
50.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
49.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
47.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CA12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
1275.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
79.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
61.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
60.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
47.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
427
Tumor
2.6
395
Tumor
2.4
921
Tumor
2.2
367
Tumor
2.0
953
Tumor
1.6
983
Tumor
1.6
125
Tumor
1.5
615
Tumor
1.5
697
Tumor
1.5
925
Tumor
1.5
567
Tumor
1.4
913
Tumor
1.4
1045
Tumor
1.2
785
Tumor
1.1
553
Tumor
1.1
713
Tumor
1.1
311
Tumor
1.0
535
Tumor
1.0
391
Tumor
1.0
537
Tumor
0.9
641
Tumor
0.9
368
Normal
0.8
627
Tumor
0.8
366
Normal
0.8
1015
Tumor
0.7
376
Normal
0.6
361
Tumor
0.6
513
Tumor
0.6
127
Tumor
0.6
1041
Tumor
0.5
331
Tumor
0.5
393
Tumor
0.5
375
Tumor
0.5
777
Tumor
0.5
362
Normal
0.5
455
Tumor
0.4
917
Tumor
0.4
383
Tumor
0.4
722
Normal
0.3
413
Tumor
0.3
525
Tumor
0.3
445
Tumor
0.3
1022
Normal
0.2
1025
Tumor
0.2
313
Tumor
0.2
448
Normal
0.2
283
Tumor
0.2
433
Tumor
0.2
1031
Tumor
0.1
332
Normal
0.1
314
Normal
0.1
298
Normal
0.1
1042
Normal
0.1
756
Normal
0.1
428
Normal
0.1
571
Tumor
0.1
786
Normal
0.1
755
Tumor
0.1
1043
Tumor
0.0
1026
Normal
0.0
573
Tumor
0.0
124
Normal
0.0
394
Normal
0.0
1016
Normal
-0.1
534
Normal
-0.1
278
Normal
-0.1
114
Normal
-0.1
1044
Normal
-0.1
312
Normal
-0.1
447
Tumor
-0.1
911
Tumor
-0.1
746
Normal
-0.1
128
Normal
-0.2
224
Normal
-0.2
984
Normal
-0.2
388
Normal
-0.2
696
Normal
-0.2
285
Tumor
-0.2
228
Normal
-0.2
1027
Tumor
-0.2
297
Tumor
-0.2
396
Normal
-0.2
111
Normal
-0.2
778
Normal
-0.2
463
Tumor
-0.2
1032
Normal
-0.3
126
Normal
-0.3
384
Normal
-0.3
557
Tumor
-0.3
1021
Tumor
-0.3
914
Normal
-0.3
286
Normal
-0.3
523
Tumor
-0.3
284
Normal
-0.3
443
Tumor
-0.3
721
Tumor
-0.3
277
Tumor
-0.3
113
Tumor
-0.3
112
Tumor
-0.3
1014
Normal
-0.3
392
Normal
-0.3
554
Normal
-0.3
386
Normal
-0.3
574
Normal
-0.3
714
Normal
-0.3
978
Normal
-0.4
123
Tumor
-0.4
568
Normal
-0.4
814
Normal
-0.4
558
Normal
-0.4
538
Normal
-0.4
883
Tumor
-0.4
877
Tumor
-0.4
421
Tumor
-0.5
564
Normal
-0.5
695
Tumor
-0.5
414
Normal
-0.5
545
Tumor
-0.5
572
Normal
-0.5
446
Normal
-0.5
981
Tumor
-0.5
423
Tumor
-0.5
515
Tumor
-0.6
387
Tumor
-0.6
951
Tumor
-0.6
563
Tumor
-0.6
212
Normal
-0.6
716
Normal
-0.6
431
Tumor
-0.6
365
Tumor
-0.6
698
Normal
-0.6
528
Normal
-0.6
982
Normal
-0.6
881
Tumor
-0.6
1028
Normal
-0.7
424
Normal
-0.7
434
Normal
-0.7
977
Tumor
-0.7
518
Normal
-0.7
546
Normal
-0.7
813
Tumor
-0.7
432
Normal
-0.7
436
Normal
-0.7
533
Tumor
-0.7
912
Normal
-0.7
923
Tumor
-0.7
466
Normal
-0.7
745
Tumor
-0.8
223
Tumor
-0.8
385
Tumor
-0.9
468
Normal
-0.9
227
Tumor
-0.9
426
Normal
-0.9
1013
Tumor
-0.9
526
Normal
-0.9
452
Normal
-1.0
617
Tumor
-1.0
884
Normal
-1.0
425
Tumor
-1.0
642
Normal
-1.0
527
Tumor
-1.0
464
Normal
-1.1
422
Normal
-1.1
882
Normal
-1.1
635
Tumor
-1.1
636
Normal
-1.1
467
Tumor
-1.1
516
Normal
-1.1
616
Normal
-1.1
628
Normal
-1.1
514
Normal
-1.2
456
Normal
-1.2
618
Normal
-1.2
715
Tumor
-1.2
956
Normal
-1.3
444
Normal
-1.3
517
Tumor
-1.4
465
Tumor
-1.4
451
Tumor
-1.4
536
Normal
-1.4
943
Tumor
-1.4
954
Normal
-1.4
938
Normal
-1.5
211
Tumor
-1.5
435
Tumor
-1.5
878
Normal
-1.6
944
Normal
-1.6
1046
Normal
-1.7
916
Normal
-1.7
926
Normal
-1.7
524
Normal
-1.7
924
Normal
-1.9
952
Normal
-2.0
955
Tumor
-2.1
915
Tumor
-2.3
918
Normal
-2.4
937
Tumor
-2.6
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
922
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
857
Tumor
N/A
737
Tumor
N/A
858
Normal
N/A
738
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
861
Tumor
N/A
741
Tumor
N/A
862
Normal
N/A
742
Normal
N/A
863
Tumor
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
