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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EED is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EED is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.3
463
Tumor
1.1
411
Tumor
1.0
211
Tumor
1.0
497
Tumor
0.9
661
Tumor
0.9
951
Tumor
0.9
425
Tumor
0.9
865
Tumor
0.8
131
Tumor
0.8
743
Tumor
0.8
813
Tumor
0.8
1013
Tumor
0.7
965
Tumor
0.7
357
Tumor
0.7
817
Tumor
0.7
385
Tumor
0.6
427
Tumor
0.6
473
Tumor
0.6
413
Tumor
0.6
635
Tumor
0.6
351
Tumor
0.6
271
Tumor
0.6
391
Tumor
0.6
943
Tumor
0.6
877
Tumor
0.6
213
Tumor
0.6
285
Tumor
0.6
387
Tumor
0.5
125
Tumor
0.5
161
Tumor
0.5
343
Tumor
0.5
221
Tumor
0.5
967
Tumor
0.5
917
Tumor
0.5
647
Tumor
0.5
217
Tumor
0.5
724
Normal
0.5
983
Tumor
0.5
267
Tumor
0.5
277
Tumor
0.5
535
Tumor
0.5
537
Tumor
0.5
283
Tumor
0.5
1021
Tumor
0.5
355
Tumor
0.4
123
Tumor
0.4
147
Tumor
0.4
573
Tumor
0.4
467
Tumor
0.4
185
Tumor
0.4
222
Normal
0.4
953
Tumor
0.4
533
Tumor
0.4
1031
Tumor
0.4
375
Tumor
0.4
695
Tumor
0.4
671
Tumor
0.4
313
Tumor
0.4
262
Normal
0.4
127
Tumor
0.4
135
Tumor
0.4
491
Tumor
0.4
977
Tumor
0.4
112
Tumor
0.4
923
Tumor
0.3
171
Tumor
0.3
257
Tumor
0.3
341
Tumor
0.3
187
Tumor
0.3
641
Tumor
0.3
1045
Tumor
0.3
141
Tumor
0.3
227
Tumor
0.3
814
Normal
0.3
367
Tumor
0.3
881
Tumor
0.3
471
Tumor
0.3
737
Tumor
0.3
455
Tumor
0.3
975
Tumor
0.3
393
Tumor
0.3
192
Normal
0.3
685
Tumor
0.3
423
Tumor
0.2
921
Tumor
0.2
268
Normal
0.2
311
Tumor
0.2
465
Tumor
0.2
415
Tumor
0.2
741
Tumor
0.2
665
Tumor
0.2
861
Tumor
0.2
663
Tumor
0.2
567
Tumor
0.2
113
Tumor
0.2
823
Tumor
0.2
727
Tumor
0.2
963
Tumor
0.2
487
Tumor
0.1
1043
Tumor
0.1
231
Tumor
0.1
873
Tumor
0.1
395
Tumor
0.1
433
Tumor
0.1
815
Tumor
0.1
447
Tumor
0.1
863
Tumor
0.1
191
Tumor
0.1
493
Tumor
0.1
883
Tumor
0.1
545
Tumor
0.1
443
Tumor
0.1
925
Tumor
0.1
1015
Tumor
0.1
615
Tumor
0.1
777
Tumor
0.1
272
Normal
0.1
483
Tumor
0.1
361
Tumor
0.1
851
Tumor
0.1
571
Tumor
0.1
435
Tumor
0.1
563
Tumor
0.0
297
Tumor
0.0
421
Tumor
0.0
517
Tumor
0.0
478
Normal
0.0
331
Tumor
0.0
223
Tumor
0.0
445
Tumor
0.0
188
Normal
0.0
715
Tumor
0.0
126
Normal
0.0
383
Tumor
0.0
258
Normal
0.0
232
Normal
0.0
481
Tumor
0.0
195
Tumor
0.0
978
Normal
0.0
966
Normal
0.0
461
Tumor
0.0
431
Tumor
0.0
365
Tumor
-0.1
314
Normal
-0.1
261
Tumor
-0.1
327
Tumor
-0.1
536
Normal
-0.1
937
Tumor
-0.1
146
Normal
-0.1
1027
Tumor
-0.1
938
Normal
-0.1
384
Normal
-0.1
981
Tumor
-0.1
1016
Normal
-0.1
982
Normal
-0.1
984
Normal
-0.1
956
Normal
-0.1
523
Tumor
-0.1
755
Tumor
-0.1
434
Normal
-0.1
913
Tumor
-0.1
124
Normal
-0.1
332
Normal
-0.1
672
Normal
-0.1
916
Normal
-0.1
148
Normal
-0.1
662
Normal
-0.1
366
Normal
-0.1
224
Normal
-0.1
558
Normal
-0.2
666
Normal
-0.2
924
Normal
-0.2
513
Tumor
-0.2
1046
Normal
-0.2
867
Tumor
-0.2
386
Normal
-0.2
721
Tumor
-0.2
1014
Normal
-0.2
388
Normal
-0.2
218
Normal
-0.2
918
Normal
-0.2
278
Normal
-0.2
444
Normal
-0.2
428
Normal
-0.2
525
Tumor
-0.2
298
Normal
-0.2
416
Normal
-0.2
955
Tumor
-0.2
915
Tumor
-0.2
944
Normal
-0.2
128
Normal
-0.2
515
Tumor
-0.2
312
Normal
-0.2
396
Normal
-0.2
526
Normal
-0.2
922
Normal
-0.2
713
Tumor
-0.2
451
Tumor
-0.2
214
Normal
-0.2
111
Normal
-0.2
138
Normal
-0.2
196
Normal
-0.2
364
Normal
-0.2
617
Tumor
-0.2
1044
Normal
-0.2
145
Tumor
-0.2
172
Normal
-0.2
186
Normal
-0.2
557
Tumor
-0.2
492
Normal
-0.2
363
Tumor
-0.2
422
Normal
-0.2
954
Normal
-0.2
648
Normal
-0.2
1042
Normal
-0.2
882
Normal
-0.2
1041
Tumor
-0.2
426
Normal
-0.2
137
Tumor
-0.2
914
Normal
-0.2
424
Normal
-0.2
857
Tumor
-0.2
162
Normal
-0.3
642
Normal
-0.3
884
Normal
-0.3
926
Normal
-0.3
392
Normal
-0.3
212
Normal
-0.3
114
Normal
-0.3
448
Normal
-0.3
362
Normal
-0.3
697
Tumor
-0.3
477
Tumor
-0.3
627
Tumor
-0.3
353
Tumor
-0.3
1025
Tumor
-0.3
568
Normal
-0.3
952
Normal
-0.3
142
Normal
-0.3
698
Normal
-0.3
482
Normal
-0.3
328
Normal
-0.3
958
Normal
-0.3
394
Normal
-0.3
446
Normal
-0.3
132
Normal
-0.3
862
Normal
-0.3
368
Normal
-0.3
553
Tumor
-0.3
356
Normal
-0.3
572
Normal
-0.3
414
Normal
-0.3
745
Tumor
-0.3
1032
Normal
-0.3
864
Normal
-0.3
785
Tumor
-0.3
574
Normal
-0.3
756
Normal
-0.4
436
Normal
-0.4
868
Normal
-0.4
376
Normal
-0.4
1026
Normal
-0.4
564
Normal
-0.4
968
Normal
-0.4
964
Normal
-0.4
722
Normal
-0.4
498
Normal
-0.4
628
Normal
-0.4
738
Normal
-0.4
664
Normal
-0.4
786
Normal
-0.4
228
Normal
-0.4
286
Normal
-0.4
358
Normal
-0.4
518
Normal
-0.4
472
Normal
-0.4
352
Normal
-0.4
524
Normal
-0.4
284
Normal
-0.4
136
Normal
-0.4
912
Normal
-0.4
432
Normal
-0.4
636
Normal
-0.4
911
Tumor
-0.4
344
Normal
-0.4
686
Normal
-0.4
342
Normal
-0.4
976
Normal
-0.4
354
Normal
-0.4
778
Normal
-0.4
723
Tumor
-0.4
878
Normal
-0.5
618
Normal
-0.5
456
Normal
-0.5
866
Normal
-0.5
488
Normal
-0.5
714
Normal
-0.5
462
Normal
-0.5
696
Normal
-0.5
716
Normal
-0.5
742
Normal
-0.5
468
Normal
-0.5
1028
Normal
-0.5
527
Tumor
-0.5
412
Normal
-0.5
616
Normal
-0.5
1022
Normal
-0.5
494
Normal
-0.5
728
Normal
-0.5
474
Normal
-0.5
466
Normal
-0.5
874
Normal
-0.5
514
Normal
-0.5
744
Normal
-0.6
516
Normal
-0.6
818
Normal
-0.6
852
Normal
-0.6
452
Normal
-0.6
816
Normal
-0.6
858
Normal
-0.6
538
Normal
-0.6
484
Normal
-0.6
746
Normal
-0.7
528
Normal
-0.7
464
Normal
-0.7
824
Normal
-0.7
534
Normal
-0.7
546
Normal
-0.8
554
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
