We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS34 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
106.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
102.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
96.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
88.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
87.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
84.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
83.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
82.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
81.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
81.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
81.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
81.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
81.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
79.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
79.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
79.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
78.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
77.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
75.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
74.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
74.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
73.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
71.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
71.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
70.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
67.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
67.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
65.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
62.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
61.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
61.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
59.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
57.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
57.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
56.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
56.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
54.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
54.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
54.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
54.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
53.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
53.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
52.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
52.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
52.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
52.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
52.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
52.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
51.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
50.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
50.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
50.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
49.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
49.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
49.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
48.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
48.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
47.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
47.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
47.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
47.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
46.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
46.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
45.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
44.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
44.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
43.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
43.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
42.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
42.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
42.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
40.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
39.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
39.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
39.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
38.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
38.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
38.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
37.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
37.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
37.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
36.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
35.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
35.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
34.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
34.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
33.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
32.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
32.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
32.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
32.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
32.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
31.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
28.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
27.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
27.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
27.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
26.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
26.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
25.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
15.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPS34 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.7
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
197.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
163.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
145.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
135.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
135.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
133.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
128.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
122.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
121.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
115.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
113.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
110.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
109.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
107.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
107.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
106.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
101.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
93.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
90.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
87.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
87.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
86.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
86.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
86.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
84.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
83.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
82.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
82.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
81.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
79.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
79.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
79.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
78.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
78.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
77.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
74.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
73.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
73.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
73.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
72.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
72.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
72.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
72.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
71.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
71.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
71.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
69.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
69.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
69.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
68.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
68.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
67.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
67.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
66.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
65.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
64.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
63.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
62.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
62.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
61.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
61.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
60.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
60.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
60.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
59.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
59.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
59.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
59.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
59.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
57.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
57.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
57.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
56.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
56.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
56.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
55.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
55.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
55.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
55.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
55.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
54.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
54.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
53.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
53.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
53.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
52.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
51.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
50.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
50.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
50.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
47.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
47.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
45.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
45.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
44.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
44.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
44.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
43.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
43.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
43.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
42.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
42.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
41.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
40.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
40.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
39.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
39.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
39.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
39.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
39.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
38.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
38.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
38.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
38.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
37.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
37.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
37.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
35.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
35.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
32.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
29.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.4
411
Tumor
1.2
473
Tumor
1.2
1041
Tumor
1.0
267
Tumor
1.0
435
Tumor
1.0
571
Tumor
0.9
557
Tumor
0.9
227
Tumor
0.8
967
Tumor
0.8
361
Tumor
0.8
745
Tumor
0.8
525
Tumor
0.7
755
Tumor
0.7
363
Tumor
0.7
537
Tumor
0.7
713
Tumor
0.7
533
Tumor
0.7
1013
Tumor
0.7
357
Tumor
0.6
423
Tumor
0.6
553
Tumor
0.6
367
Tumor
0.6
387
Tumor
0.6
393
Tumor
0.6
145
Tumor
0.6
743
Tumor
0.6
695
Tumor
0.6
327
Tumor
0.6
635
Tumor
0.6
641
Tumor
0.6
127
Tumor
0.6
477
Tumor
0.6
257
Tumor
0.6
741
Tumor
0.5
271
Tumor
0.5
567
Tumor
0.5
123
Tumor
0.5
395
Tumor
0.5
221
Tumor
0.5
715
Tumor
0.5
427
Tumor
0.5
663
Tumor
0.5
171
Tumor
0.5
535
Tumor
0.5
823
Tumor
0.5
665
Tumor
0.5
517
Tumor
0.5
483
Tumor
0.5
981
Tumor
0.5
913
Tumor
0.5
513
Tumor
0.5
957
Tumor
0.4
355
Tumor
0.4
1021
Tumor
0.4
977
Tumor
0.4
391
Tumor
0.4
685
Tumor
0.4
915
Tumor
0.4
911
Tumor
0.4
1025
Tumor
0.4
573
Tumor
0.4
724
Normal
0.4
465
Tumor
0.4
721
Tumor
0.4
385
Tumor
0.4
365
Tumor
0.4
261
Tumor
0.4
965
Tumor
0.4
865
Tumor
0.3
313
Tumor
0.3
351
Tumor
0.3
951
Tumor
0.3
937
Tumor
0.3
187
Tumor
0.3
147
Tumor
0.3
526
Normal
0.3
877
Tumor
0.3
277
Tumor
0.3
467
Tumor
0.3
883
Tumor
0.3
497
Tumor
0.3
647
Tumor
0.3
195
Tumor
0.3
191
Tumor
0.3
912
Normal
0.3
642
Normal
0.3
983
Tumor
0.3
272
Normal
0.3
671
Tumor
0.3
463
Tumor
0.2
413
Tumor
0.2
213
Tumor
0.2
353
Tumor
0.2
493
Tumor
0.2
615
Tumor
0.2
953
Tumor
0.2
616
Normal
0.2
851
Tumor
0.2
471
Tumor
0.2
617
Tumor
0.2
433
Tumor
0.2
258
Normal
0.2
861
Tumor
0.2
331
Tumor
0.2
223
Tumor
0.2
113
Tumor
0.2
696
Normal
0.2
112
Tumor
0.2
436
Normal
0.1
661
Tumor
0.1
523
Tumor
0.1
564
Normal
0.1
867
Tumor
0.1
446
Normal
0.1
697
Tumor
0.1
366
Normal
0.1
1014
Normal
0.1
944
Normal
0.1
132
Normal
0.1
664
Normal
0.1
722
Normal
0.1
914
Normal
0.1
777
Tumor
0.1
383
Tumor
0.1
431
Tumor
0.1
474
Normal
0.1
432
Normal
0.1
341
Tumor
0.1
618
Normal
0.1
923
Tumor
0.1
451
Tumor
0.1
756
Normal
0.1
356
Normal
0.1
128
Normal
0.1
648
Normal
0.1
554
Normal
0.1
727
Tumor
0.1
285
Tumor
0.1
514
Normal
0.1
1031
Tumor
0.1
516
Normal
0.1
375
Tumor
0.1
462
Normal
0.0
188
Normal
0.0
963
Tumor
0.0
388
Normal
0.0
148
Normal
0.0
572
Normal
0.0
716
Normal
0.0
491
Tumor
0.0
146
Normal
0.0
114
Normal
0.0
746
Normal
0.0
728
Normal
0.0
232
Normal
0.0
815
Tumor
0.0
472
Normal
0.0
574
Normal
0.0
817
Tumor
0.0
686
Normal
0.0
482
Normal
0.0
278
Normal
0.0
416
Normal
0.0
864
Normal
0.0
136
Normal
0.0
358
Normal
0.0
527
Tumor
0.0
466
Normal
0.0
723
Tumor
0.0
481
Tumor
0.0
312
Normal
0.0
925
Tumor
0.0
714
Normal
0.0
498
Normal
0.0
956
Normal
0.0
884
Normal
0.0
868
Normal
0.0
328
Normal
0.0
268
Normal
0.0
185
Tumor
0.0
297
Tumor
0.0
518
Normal
0.0
666
Normal
0.0
386
Normal
0.0
396
Normal
0.0
161
Tumor
0.0
926
Normal
0.0
131
Tumor
0.0
738
Normal
0.0
162
Normal
0.0
785
Tumor
0.0
142
Normal
-0.1
364
Normal
-0.1
978
Normal
-0.1
376
Normal
-0.1
662
Normal
-0.1
444
Normal
-0.1
546
Normal
-0.1
534
Normal
-0.1
487
Tumor
-0.1
786
Normal
-0.1
222
Normal
-0.1
874
Normal
-0.1
415
Tumor
-0.1
362
Normal
-0.1
111
Normal
-0.1
126
Normal
-0.1
545
Tumor
-0.1
314
Normal
-0.1
172
Normal
-0.1
824
Normal
-0.1
858
Normal
-0.1
1022
Normal
-0.1
138
Normal
-0.1
628
Normal
-0.1
1016
Normal
-0.1
137
Tumor
-0.1
1042
Normal
-0.1
141
Tumor
-0.1
964
Normal
-0.1
636
Normal
-0.1
982
Normal
-0.1
135
Tumor
-0.1
816
Normal
-0.1
873
Tumor
-0.1
434
Normal
-0.1
916
Normal
-0.1
228
Normal
-0.1
1045
Tumor
-0.1
954
Normal
-0.1
528
Normal
-0.1
778
Normal
-0.1
428
Normal
-0.1
368
Normal
-0.1
968
Normal
-0.2
484
Normal
-0.2
1015
Tumor
-0.2
958
Normal
-0.2
882
Normal
-0.2
426
Normal
-0.2
214
Normal
-0.2
494
Normal
-0.2
881
Tumor
-0.2
286
Normal
-0.2
447
Tumor
-0.2
332
Normal
-0.2
524
Normal
-0.2
952
Normal
-0.2
478
Normal
-0.2
412
Normal
-0.2
558
Normal
-0.2
212
Normal
-0.2
311
Tumor
-0.2
976
Normal
-0.2
343
Tumor
-0.2
284
Normal
-0.2
196
Normal
-0.2
955
Tumor
-0.2
922
Normal
-0.2
857
Tumor
-0.2
627
Tumor
-0.2
384
Normal
-0.2
866
Normal
-0.2
878
Normal
-0.2
984
Normal
-0.2
125
Tumor
-0.2
464
Normal
-0.2
1046
Normal
-0.2
124
Normal
-0.2
217
Tumor
-0.2
298
Normal
-0.2
568
Normal
-0.2
211
Tumor
-0.2
1032
Normal
-0.2
224
Normal
-0.2
192
Normal
-0.2
425
Tumor
-0.2
563
Tumor
-0.2
492
Normal
-0.2
1028
Normal
-0.2
1026
Normal
-0.3
938
Normal
-0.3
742
Normal
-0.3
862
Normal
-0.3
342
Normal
-0.3
443
Tumor
-0.3
445
Tumor
-0.3
422
Normal
-0.3
424
Normal
-0.3
344
Normal
-0.3
813
Tumor
-0.3
452
Normal
-0.3
392
Normal
-0.3
1043
Tumor
-0.3
698
Normal
-0.3
918
Normal
-0.3
352
Normal
-0.3
852
Normal
-0.3
394
Normal
-0.3
262
Normal
-0.3
461
Tumor
-0.3
488
Normal
-0.3
354
Normal
-0.3
818
Normal
-0.3
414
Normal
-0.3
515
Tumor
-0.3
468
Normal
-0.3
536
Normal
-0.3
975
Tumor
-0.4
966
Normal
-0.4
737
Tumor
-0.4
448
Normal
-0.4
421
Tumor
-0.4
186
Normal
-0.4
1044
Normal
-0.4
456
Normal
-0.4
538
Normal
-0.4
814
Normal
-0.4
1027
Tumor
-0.4
283
Tumor
-0.4
924
Normal
-0.5
917
Tumor
-0.5
863
Tumor
-0.5
921
Tumor
-0.5
672
Normal
-0.6
943
Tumor
-0.6
218
Normal
-0.6
455
Tumor
-0.6
744
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
