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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGF2BP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
63.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
53.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
43.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
22.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGF2BP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
101.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
46.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
41.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
40.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
35.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
30.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
3.3
743
Tumor
3.3
285
Tumor
2.9
967
Tumor
2.8
131
Tumor
2.7
983
Tumor
2.4
363
Tumor
2.3
367
Tumor
2.3
921
Tumor
2.2
965
Tumor
2.2
671
Tumor
2.1
517
Tumor
1.9
413
Tumor
1.9
553
Tumor
1.9
331
Tumor
1.9
351
Tumor
1.9
727
Tumor
1.8
391
Tumor
1.8
851
Tumor
1.7
385
Tumor
1.6
1043
Tumor
1.5
661
Tumor
1.5
545
Tumor
1.4
447
Tumor
1.4
535
Tumor
1.4
665
Tumor
1.4
271
Tumor
1.3
221
Tumor
1.3
227
Tumor
1.3
477
Tumor
1.2
567
Tumor
1.2
123
Tumor
1.1
1031
Tumor
1.1
641
Tumor
1.0
341
Tumor
1.0
425
Tumor
0.9
171
Tumor
0.9
297
Tumor
0.9
395
Tumor
0.9
1021
Tumor
0.8
443
Tumor
0.8
883
Tumor
0.7
815
Tumor
0.7
277
Tumor
0.6
951
Tumor
0.6
471
Tumor
0.6
537
Tumor
0.6
527
Tumor
0.5
1027
Tumor
0.5
473
Tumor
0.5
497
Tumor
0.5
283
Tumor
0.4
463
Tumor
0.4
343
Tumor
0.4
963
Tumor
0.4
387
Tumor
0.4
865
Tumor
0.4
435
Tumor
0.4
953
Tumor
0.4
737
Tumor
0.3
223
Tumor
0.3
217
Tumor
0.3
431
Tumor
0.3
231
Tumor
0.3
483
Tumor
0.3
493
Tumor
0.3
125
Tumor
0.2
357
Tumor
0.2
257
Tumor
0.1
817
Tumor
0.1
311
Tumor
0.1
923
Tumor
0.0
744
Normal
0.0
135
Tumor
0.0
715
Tumor
0.0
411
Tumor
0.0
455
Tumor
0.0
313
Tumor
0.0
352
Normal
0.0
286
Normal
-0.1
523
Tumor
-0.1
161
Tumor
-0.1
957
Tumor
-0.1
132
Normal
-0.1
1025
Tumor
-0.1
332
Normal
-0.1
975
Tumor
-0.1
433
Tumor
-0.1
185
Tumor
-0.1
127
Tumor
-0.1
533
Tumor
-0.2
563
Tumor
-0.2
685
Tumor
-0.2
368
Normal
-0.2
647
Tumor
-0.2
355
Tumor
-0.2
573
Tumor
-0.2
525
Tumor
-0.2
415
Tumor
-0.2
213
Tumor
-0.2
977
Tumor
-0.3
222
Normal
-0.3
147
Tumor
-0.3
375
Tumor
-0.3
187
Tumor
-0.3
713
Tumor
-0.3
813
Tumor
-0.3
742
Normal
-0.4
728
Normal
-0.4
557
Tumor
-0.4
145
Tumor
-0.4
383
Tumor
-0.4
314
Normal
-0.4
937
Tumor
-0.4
723
Tumor
-0.4
272
Normal
-0.5
755
Tumor
-0.5
467
Tumor
-0.5
666
Normal
-0.5
925
Tumor
-0.5
1013
Tumor
-0.5
284
Normal
-0.5
142
Normal
-0.5
943
Tumor
-0.5
745
Tumor
-0.5
136
Normal
-0.5
361
Tumor
-0.5
741
Tumor
-0.5
738
Normal
-0.5
1042
Normal
-0.5
968
Normal
-0.5
298
Normal
-0.5
228
Normal
-0.5
964
Normal
-0.5
444
Normal
-0.5
966
Normal
-0.5
138
Normal
-0.5
881
Tumor
-0.5
984
Normal
-0.5
571
Tumor
-0.5
224
Normal
-0.5
146
Normal
-0.6
461
Tumor
-0.6
976
Normal
-0.6
393
Tumor
-0.6
388
Normal
-0.6
312
Normal
-0.6
384
Normal
-0.6
376
Normal
-0.6
366
Normal
-0.6
448
Normal
-0.6
386
Normal
-0.6
427
Tumor
-0.6
195
Tumor
-0.6
112
Tumor
-0.6
852
Normal
-0.6
724
Normal
-0.6
344
Normal
-0.6
1032
Normal
-0.6
428
Normal
-0.6
546
Normal
-0.6
354
Normal
-0.7
414
Normal
-0.7
534
Normal
-0.7
538
Normal
-0.7
421
Tumor
-0.7
172
Normal
-0.7
536
Normal
-0.7
424
Normal
-0.7
394
Normal
-0.7
392
Normal
-0.7
823
Tumor
-0.7
1028
Normal
-0.7
278
Normal
-0.7
426
Normal
-0.7
1014
Normal
-0.7
396
Normal
-0.7
721
Tumor
-0.7
232
Normal
-0.8
212
Normal
-0.8
342
Normal
-0.8
818
Normal
-0.8
922
Normal
-0.8
662
Normal
-0.8
642
Normal
-0.8
423
Tumor
-0.8
258
Normal
-0.8
137
Tumor
-0.8
141
Tumor
-0.8
917
Tumor
-0.8
478
Normal
-0.8
648
Normal
-0.8
958
Normal
-0.8
518
Normal
-0.8
528
Normal
-0.8
328
Normal
-0.8
1026
Normal
-0.8
358
Normal
-0.8
362
Normal
-0.8
262
Normal
-0.8
422
Normal
-0.8
878
Normal
-0.8
982
Normal
-0.8
416
Normal
-0.9
1046
Normal
-0.9
884
Normal
-0.9
664
Normal
-0.9
186
Normal
-0.9
491
Tumor
-0.9
445
Tumor
-0.9
446
Normal
-0.9
364
Normal
-0.9
1022
Normal
-0.9
188
Normal
-0.9
162
Normal
-0.9
824
Normal
-0.9
816
Normal
-0.9
192
Normal
-0.9
365
Tumor
-0.9
516
Normal
-0.9
436
Normal
-0.9
353
Tumor
-0.9
814
Normal
-1.0
356
Normal
-1.0
498
Normal
-1.0
268
Normal
-1.0
191
Tumor
-1.0
882
Normal
-1.0
698
Normal
-1.0
978
Normal
-1.0
857
Tumor
-1.0
912
Normal
-1.0
474
Normal
-1.0
451
Tumor
-1.0
1016
Normal
-1.0
695
Tumor
-1.0
148
Normal
-1.0
918
Normal
-1.0
526
Normal
-1.0
482
Normal
-1.0
568
Normal
-1.0
697
Tumor
-1.0
524
Normal
-1.0
126
Normal
-1.0
432
Normal
-1.0
462
Normal
-1.1
434
Normal
-1.1
113
Tumor
-1.1
218
Normal
-1.1
858
Normal
-1.1
124
Normal
-1.1
492
Normal
-1.1
494
Normal
-1.1
267
Tumor
-1.1
412
Normal
-1.1
914
Normal
-1.1
574
Normal
-1.1
211
Tumor
-1.1
635
Tumor
-1.1
716
Normal
-1.1
114
Normal
-1.1
128
Normal
-1.1
663
Tumor
-1.1
488
Normal
-1.1
916
Normal
-1.1
1044
Normal
-1.1
714
Normal
-1.2
572
Normal
-1.2
558
Normal
-1.2
196
Normal
-1.2
214
Normal
-1.2
514
Normal
-1.2
696
Normal
-1.2
924
Normal
-1.2
1045
Tumor
-1.2
926
Normal
-1.2
464
Normal
-1.2
866
Normal
-1.2
111
Normal
-1.2
564
Normal
-1.2
472
Normal
-1.2
786
Normal
-1.3
515
Tumor
-1.3
756
Normal
-1.3
722
Normal
-1.3
778
Normal
-1.3
261
Tumor
-1.3
484
Normal
-1.3
777
Tumor
-1.4
468
Normal
-1.4
1041
Tumor
-1.4
686
Normal
-1.4
456
Normal
-1.4
952
Normal
-1.4
954
Normal
-1.5
327
Tumor
-1.5
513
Tumor
-1.5
481
Tumor
-1.5
618
Normal
-1.5
956
Normal
-1.6
465
Tumor
-1.6
466
Normal
-1.6
636
Normal
-1.6
616
Normal
-1.6
913
Tumor
-1.6
746
Normal
-1.6
981
Tumor
-1.6
1015
Tumor
-1.7
864
Normal
-1.7
911
Tumor
-1.7
868
Normal
-1.7
487
Tumor
-1.7
452
Normal
-1.7
915
Tumor
-1.7
944
Normal
-1.7
874
Normal
-1.8
785
Tumor
-1.8
938
Normal
-1.8
628
Normal
-1.8
861
Tumor
-2.0
873
Tumor
-2.0
615
Tumor
-2.2
867
Tumor
-2.2
617
Tumor
-2.2
862
Normal
-2.2
627
Tumor
-2.3
554
Normal
-2.3
955
Tumor
-2.4
863
Tumor
-2.5
672
Normal
-3.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
