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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
119.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
101.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
94.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
79.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
71.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
71.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
68.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
68.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
62.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
59.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
53.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
53.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
50.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
49.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
46.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
46.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
44.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
44.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
36.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
36.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
33.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
33.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
26.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
23.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
23.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
22.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMARCE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.3
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
103.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
96.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
90.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
88.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
82.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
78.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
78.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
68.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
67.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
66.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
66.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
64.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
63.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
62.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
62.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
62.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
61.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
60.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
60.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
60.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
60.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
59.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
58.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
58.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
56.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
55.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
55.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
55.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
54.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
53.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
53.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
53.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
52.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
51.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
51.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
51.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
50.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
50.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
49.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
46.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
46.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
44.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
44.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
44.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
43.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
42.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
42.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
41.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
41.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
40.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
40.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
39.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
39.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
39.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
38.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
38.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
38.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
37.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
37.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
35.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
33.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
29.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
27.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.1
965
Tumor
1.0
161
Tumor
1.0
951
Tumor
1.0
497
Tumor
0.9
661
Tumor
0.8
463
Tumor
0.8
487
Tumor
0.8
1021
Tumor
0.8
865
Tumor
0.8
351
Tumor
0.8
211
Tumor
0.7
473
Tumor
0.7
355
Tumor
0.7
367
Tumor
0.7
737
Tumor
0.7
425
Tumor
0.7
285
Tumor
0.7
877
Tumor
0.7
817
Tumor
0.6
517
Tumor
0.6
957
Tumor
0.6
1031
Tumor
0.6
813
Tumor
0.6
983
Tumor
0.6
921
Tumor
0.6
523
Tumor
0.6
695
Tumor
0.6
545
Tumor
0.6
943
Tumor
0.6
391
Tumor
0.6
917
Tumor
0.5
724
Normal
0.5
663
Tumor
0.5
331
Tumor
0.5
815
Tumor
0.5
131
Tumor
0.5
814
Normal
0.5
277
Tumor
0.5
881
Tumor
0.5
483
Tumor
0.5
727
Tumor
0.5
431
Tumor
0.5
123
Tumor
0.5
977
Tumor
0.5
1013
Tumor
0.5
271
Tumor
0.4
427
Tumor
0.4
283
Tumor
0.4
443
Tumor
0.4
525
Tumor
0.4
447
Tumor
0.4
777
Tumor
0.4
967
Tumor
0.4
411
Tumor
0.4
721
Tumor
0.4
171
Tumor
0.4
341
Tumor
0.4
963
Tumor
0.4
937
Tumor
0.4
455
Tumor
0.4
883
Tumor
0.4
527
Tumor
0.4
1025
Tumor
0.3
383
Tumor
0.3
533
Tumor
0.3
975
Tumor
0.3
647
Tumor
0.3
387
Tumor
0.3
671
Tumor
0.3
923
Tumor
0.3
953
Tumor
0.3
563
Tumor
0.3
535
Tumor
0.3
493
Tumor
0.3
741
Tumor
0.3
231
Tumor
0.3
471
Tumor
0.3
221
Tumor
0.3
185
Tumor
0.3
537
Tumor
0.3
311
Tumor
0.3
863
Tumor
0.2
915
Tumor
0.2
524
Normal
0.2
127
Tumor
0.2
478
Normal
0.2
213
Tumor
0.2
357
Tumor
0.2
685
Tumor
0.2
343
Tumor
0.2
395
Tumor
0.2
925
Tumor
0.2
515
Tumor
0.2
861
Tumor
0.2
823
Tumor
0.2
385
Tumor
0.2
641
Tumor
0.2
141
Tumor
0.2
363
Tumor
0.2
297
Tumor
0.2
491
Tumor
0.2
573
Tumor
0.2
112
Tumor
0.2
125
Tumor
0.2
444
Normal
0.2
375
Tumor
0.1
268
Normal
0.1
415
Tumor
0.1
635
Tumor
0.1
536
Normal
0.1
911
Tumor
0.1
421
Tumor
0.1
313
Tumor
0.1
423
Tumor
0.1
916
Normal
0.1
567
Tumor
0.1
413
Tumor
0.1
361
Tumor
0.1
461
Tumor
0.1
433
Tumor
0.1
1015
Tumor
0.1
1043
Tumor
0.1
857
Tumor
0.1
492
Normal
0.1
713
Tumor
0.1
785
Tumor
0.1
1041
Tumor
0.1
467
Tumor
0.1
227
Tumor
0.1
445
Tumor
0.1
513
Tumor
0.1
966
Normal
0.0
498
Normal
0.0
365
Tumor
0.0
147
Tumor
0.0
188
Normal
0.0
192
Normal
0.0
135
Tumor
0.0
465
Tumor
0.0
267
Tumor
0.0
913
Tumor
0.0
697
Tumor
0.0
261
Tumor
0.0
538
Normal
0.0
516
Normal
0.0
435
Tumor
0.0
954
Normal
0.0
477
Tumor
0.0
571
Tumor
0.0
553
Tumor
0.0
384
Normal
0.0
665
Tumor
0.0
217
Tumor
0.0
617
Tumor
0.0
924
Normal
0.0
557
Tumor
0.0
938
Normal
-0.1
852
Normal
-0.1
224
Normal
-0.1
918
Normal
-0.1
672
Normal
-0.1
126
Normal
-0.1
867
Tumor
-0.1
686
Normal
-0.1
223
Tumor
-0.1
195
Tumor
-0.1
257
Tumor
-0.1
212
Normal
-0.1
716
Normal
-0.1
978
Normal
-0.1
386
Normal
-0.1
137
Tumor
-0.1
434
Normal
-0.1
412
Normal
-0.1
344
Normal
-0.1
262
Normal
-0.1
868
Normal
-0.1
715
Tumor
-0.1
146
Normal
-0.1
964
Normal
-0.1
1014
Normal
-0.1
926
Normal
-0.1
874
Normal
-0.1
976
Normal
-0.1
1028
Normal
-0.1
1032
Normal
-0.2
858
Normal
-0.2
984
Normal
-0.2
981
Tumor
-0.2
514
Normal
-0.2
922
Normal
-0.2
662
Normal
-0.2
968
Normal
-0.2
666
Normal
-0.2
1027
Tumor
-0.2
364
Normal
-0.2
955
Tumor
-0.2
392
Normal
-0.2
353
Tumor
-0.2
873
Tumor
-0.2
755
Tumor
-0.2
327
Tumor
-0.2
664
Normal
-0.2
451
Tumor
-0.2
142
Normal
-0.2
572
Normal
-0.2
558
Normal
-0.2
138
Normal
-0.2
1042
Normal
-0.2
944
Normal
-0.2
1044
Normal
-0.2
396
Normal
-0.2
816
Normal
-0.2
958
Normal
-0.2
342
Normal
-0.2
738
Normal
-0.2
481
Tumor
-0.2
272
Normal
-0.2
352
Normal
-0.2
723
Tumor
-0.2
284
Normal
-0.2
191
Tumor
-0.2
546
Normal
-0.2
428
Normal
-0.2
554
Normal
-0.2
494
Normal
-0.2
818
Normal
-0.2
332
Normal
-0.2
472
Normal
-0.2
744
Normal
-0.2
424
Normal
-0.2
912
Normal
-0.2
982
Normal
-0.2
1022
Normal
-0.2
534
Normal
-0.2
162
Normal
-0.2
778
Normal
-0.2
528
Normal
-0.2
714
Normal
-0.2
956
Normal
-0.2
172
Normal
-0.2
1016
Normal
-0.2
358
Normal
-0.2
394
Normal
-0.2
518
Normal
-0.2
696
Normal
-0.2
526
Normal
-0.2
312
Normal
-0.2
884
Normal
-0.2
878
Normal
-0.2
862
Normal
-0.2
1026
Normal
-0.2
187
Tumor
-0.3
488
Normal
-0.3
824
Normal
-0.3
648
Normal
-0.3
866
Normal
-0.3
568
Normal
-0.3
574
Normal
-0.3
148
Normal
-0.3
742
Normal
-0.3
298
Normal
-0.3
722
Normal
-0.3
145
Tumor
-0.3
756
Normal
-0.3
448
Normal
-0.3
328
Normal
-0.3
258
Normal
-0.3
362
Normal
-0.3
1045
Tumor
-0.3
186
Normal
-0.3
484
Normal
-0.3
232
Normal
-0.3
728
Normal
-0.3
124
Normal
-0.3
366
Normal
-0.3
111
Normal
-0.3
422
Normal
-0.3
114
Normal
-0.3
952
Normal
-0.3
432
Normal
-0.3
218
Normal
-0.3
882
Normal
-0.3
376
Normal
-0.3
354
Normal
-0.3
356
Normal
-0.3
914
Normal
-0.3
851
Tumor
-0.3
864
Normal
-0.3
786
Normal
-0.3
388
Normal
-0.3
474
Normal
-0.3
278
Normal
-0.3
446
Normal
-0.3
1046
Normal
-0.3
368
Normal
-0.3
128
Normal
-0.3
615
Tumor
-0.3
228
Normal
-0.3
482
Normal
-0.3
132
Normal
-0.3
746
Normal
-0.3
698
Normal
-0.3
436
Normal
-0.4
466
Normal
-0.4
426
Normal
-0.4
136
Normal
-0.4
416
Normal
-0.4
564
Normal
-0.4
286
Normal
-0.4
196
Normal
-0.4
462
Normal
-0.4
628
Normal
-0.4
314
Normal
-0.4
456
Normal
-0.4
222
Normal
-0.4
214
Normal
-0.4
464
Normal
-0.4
627
Tumor
-0.4
414
Normal
-0.4
636
Normal
-0.4
113
Tumor
-0.4
468
Normal
-0.5
642
Normal
-0.5
616
Normal
-0.5
618
Normal
-0.5
745
Tumor
-0.6
393
Tumor
-0.7
452
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.