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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDE8A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDE8A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
62.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
57.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
0.9
744
Normal
0.8
723
Tumor
0.7
785
Tumor
0.7
615
Tumor
0.7
882
Normal
0.6
756
Normal
0.6
332
Normal
0.6
478
Normal
0.6
698
Normal
0.6
466
Normal
0.6
465
Tumor
0.6
327
Tumor
0.6
314
Normal
0.6
546
Normal
0.6
912
Normal
0.5
472
Normal
0.5
1022
Normal
0.5
384
Normal
0.5
162
Normal
0.5
742
Normal
0.5
376
Normal
0.5
716
Normal
0.5
468
Normal
0.5
558
Normal
0.5
618
Normal
0.5
298
Normal
0.5
461
Tumor
0.5
714
Normal
0.5
482
Normal
0.5
786
Normal
0.5
186
Normal
0.5
464
Normal
0.5
672
Normal
0.5
627
Tumor
0.5
964
Normal
0.5
728
Normal
0.5
488
Normal
0.5
884
Normal
0.5
878
Normal
0.5
342
Normal
0.5
448
Normal
0.5
368
Normal
0.5
474
Normal
0.4
516
Normal
0.4
484
Normal
0.4
172
Normal
0.4
777
Tumor
0.4
328
Normal
0.4
636
Normal
0.4
958
Normal
0.4
232
Normal
0.4
534
Normal
0.4
128
Normal
0.4
722
Normal
0.4
926
Normal
0.4
778
Normal
0.4
416
Normal
0.4
1042
Normal
0.4
746
Normal
0.4
148
Normal
0.4
356
Normal
0.4
1044
Normal
0.4
568
Normal
0.4
738
Normal
0.4
648
Normal
0.4
616
Normal
0.4
1026
Normal
0.4
456
Normal
0.4
352
Normal
0.4
1032
Normal
0.4
824
Normal
0.4
354
Normal
0.4
514
Normal
0.4
862
Normal
0.4
426
Normal
0.4
686
Normal
0.4
284
Normal
0.4
353
Tumor
0.4
818
Normal
0.3
396
Normal
0.3
481
Tumor
0.3
364
Normal
0.3
388
Normal
0.3
868
Normal
0.3
142
Normal
0.3
312
Normal
0.3
344
Normal
0.3
258
Normal
0.3
278
Normal
0.3
858
Normal
0.3
696
Normal
0.3
647
Tumor
0.3
984
Normal
0.3
1046
Normal
0.3
968
Normal
0.3
944
Normal
0.3
554
Normal
0.3
358
Normal
0.3
982
Normal
0.3
914
Normal
0.3
1016
Normal
0.3
574
Normal
0.3
366
Normal
0.3
494
Normal
0.3
528
Normal
0.3
412
Normal
0.3
924
Normal
0.3
922
Normal
0.3
498
Normal
0.3
262
Normal
0.3
526
Normal
0.3
1014
Normal
0.3
572
Normal
0.3
662
Normal
0.3
196
Normal
0.3
642
Normal
0.3
444
Normal
0.3
146
Normal
0.3
414
Normal
0.3
436
Normal
0.3
126
Normal
0.3
446
Normal
0.3
874
Normal
0.2
111
Normal
0.2
518
Normal
0.2
272
Normal
0.2
286
Normal
0.2
462
Normal
0.2
432
Normal
0.2
114
Normal
0.2
212
Normal
0.2
428
Normal
0.2
628
Normal
0.2
224
Normal
0.2
423
Tumor
0.2
954
Normal
0.2
483
Tumor
0.2
214
Normal
0.2
161
Tumor
0.2
228
Normal
0.2
192
Normal
0.2
452
Normal
0.2
666
Normal
0.2
362
Normal
0.2
864
Normal
0.2
713
Tumor
0.2
422
Normal
0.2
268
Normal
0.2
424
Normal
0.2
392
Normal
0.2
866
Normal
0.2
524
Normal
0.2
394
Normal
0.2
221
Tumor
0.2
124
Normal
0.2
695
Tumor
0.2
863
Tumor
0.2
664
Normal
0.2
467
Tumor
0.2
564
Normal
0.2
976
Normal
0.2
966
Normal
0.2
721
Tumor
0.2
852
Normal
0.2
816
Normal
0.2
112
Tumor
0.2
188
Normal
0.2
443
Tumor
0.1
285
Tumor
0.1
918
Normal
0.1
553
Tumor
0.1
938
Normal
0.1
487
Tumor
0.1
127
Tumor
0.1
357
Tumor
0.1
222
Normal
0.1
386
Normal
0.1
138
Normal
0.1
563
Tumor
0.1
916
Normal
0.1
425
Tumor
0.1
113
Tumor
0.1
913
Tumor
0.1
1028
Normal
0.1
538
Normal
0.1
873
Tumor
0.1
536
Normal
0.1
331
Tumor
0.1
445
Tumor
0.1
663
Tumor
0.1
433
Tumor
0.1
415
Tumor
0.1
341
Tumor
0.1
545
Tumor
0.1
925
Tumor
0.1
492
Normal
0.1
517
Tumor
0.1
218
Normal
0.0
1021
Tumor
0.0
136
Normal
0.0
571
Tumor
0.0
978
Normal
0.0
132
Normal
0.0
956
Normal
0.0
952
Normal
0.0
434
Normal
0.0
981
Tumor
0.0
187
Tumor
0.0
955
Tumor
0.0
883
Tumor
0.0
365
Tumor
0.0
493
Tumor
0.0
1045
Tumor
0.0
421
Tumor
0.0
343
Tumor
0.0
447
Tumor
0.0
277
Tumor
0.0
965
Tumor
0.0
513
Tumor
0.0
217
Tumor
-0.1
881
Tumor
-0.1
635
Tumor
-0.1
473
Tumor
-0.1
383
Tumor
-0.1
515
Tumor
-0.1
261
Tumor
-0.1
533
Tumor
-0.1
413
Tumor
-0.1
641
Tumor
-0.1
195
Tumor
-0.1
147
Tumor
-0.1
137
Tumor
-0.1
141
Tumor
-0.1
671
Tumor
-0.1
851
Tumor
-0.1
185
Tumor
-0.1
911
Tumor
-0.1
755
Tumor
-0.1
361
Tumor
-0.1
857
Tumor
-0.1
823
Tumor
-0.1
915
Tumor
-0.2
737
Tumor
-0.2
477
Tumor
-0.2
257
Tumor
-0.2
471
Tumor
-0.2
527
Tumor
-0.2
191
Tumor
-0.2
963
Tumor
-0.2
921
Tumor
-0.2
1025
Tumor
-0.2
917
Tumor
-0.2
557
Tumor
-0.2
227
Tumor
-0.2
171
Tumor
-0.2
427
Tumor
-0.2
573
Tumor
-0.2
867
Tumor
-0.2
297
Tumor
-0.2
741
Tumor
-0.2
267
Tumor
-0.2
271
Tumor
-0.2
391
Tumor
-0.2
1041
Tumor
-0.3
213
Tumor
-0.3
411
Tumor
-0.3
814
Normal
-0.3
983
Tumor
-0.3
311
Tumor
-0.3
145
Tumor
-0.3
463
Tumor
-0.3
497
Tumor
-0.3
617
Tumor
-0.3
1043
Tumor
-0.3
745
Tumor
-0.3
697
Tumor
-0.3
1013
Tumor
-0.3
223
Tumor
-0.3
957
Tumor
-0.3
877
Tumor
-0.3
451
Tumor
-0.3
937
Tumor
-0.4
975
Tumor
-0.4
375
Tumor
-0.4
1027
Tumor
-0.4
455
Tumor
-0.4
727
Tumor
-0.4
313
Tumor
-0.4
923
Tumor
-0.4
665
Tumor
-0.4
367
Tumor
-0.4
1031
Tumor
-0.4
363
Tumor
-0.4
861
Tumor
-0.4
977
Tumor
-0.4
355
Tumor
-0.4
815
Tumor
-0.4
953
Tumor
-0.4
525
Tumor
-0.5
135
Tumor
-0.5
393
Tumor
-0.5
351
Tumor
-0.5
817
Tumor
-0.5
865
Tumor
-0.5
435
Tumor
-0.5
491
Tumor
-0.5
715
Tumor
-0.5
1015
Tumor
-0.5
523
Tumor
-0.5
125
Tumor
-0.5
685
Tumor
-0.5
967
Tumor
-0.5
131
Tumor
-0.6
951
Tumor
-0.6
743
Tumor
-0.6
535
Tumor
-0.6
123
Tumor
-0.6
813
Tumor
-0.6
211
Tumor
-0.6
567
Tumor
-0.6
387
Tumor
-0.7
395
Tumor
-0.7
661
Tumor
-0.7
943
Tumor
-0.8
537
Tumor
-0.8
283
Tumor
-0.8
231
Tumor
-0.9
385
Tumor
-0.9
724
Normal
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
