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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCM2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
92.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
69.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
67.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
63.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
62.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
61.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
56.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
52.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
45.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
28.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
19.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
14.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MCM2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
56.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
1.9
497
Tumor
1.8
965
Tumor
1.8
463
Tumor
1.7
161
Tumor
1.7
411
Tumor
1.6
865
Tumor
1.6
957
Tumor
1.6
357
Tumor
1.4
523
Tumor
1.4
1013
Tumor
1.4
413
Tumor
1.4
391
Tumor
1.4
953
Tumor
1.3
663
Tumor
1.3
285
Tumor
1.3
277
Tumor
1.3
951
Tumor
1.2
427
Tumor
1.2
355
Tumor
1.2
473
Tumor
1.2
351
Tumor
1.2
387
Tumor
1.1
983
Tumor
1.1
487
Tumor
1.1
367
Tumor
1.1
331
Tumor
1.1
211
Tumor
1.0
724
Normal
1.0
815
Tumor
1.0
647
Tumor
1.0
743
Tumor
1.0
661
Tumor
1.0
465
Tumor
0.9
375
Tumor
0.9
385
Tumor
0.9
923
Tumor
0.9
943
Tumor
0.9
525
Tumor
0.8
131
Tumor
0.8
491
Tumor
0.8
695
Tumor
0.7
567
Tumor
0.7
343
Tumor
0.7
883
Tumor
0.7
537
Tumor
0.6
141
Tumor
0.6
493
Tumor
0.6
267
Tumor
0.6
425
Tumor
0.6
814
Normal
0.6
125
Tumor
0.6
727
Tumor
0.5
813
Tumor
0.5
283
Tumor
0.5
341
Tumor
0.5
671
Tumor
0.5
665
Tumor
0.5
873
Tumor
0.5
213
Tumor
0.5
1031
Tumor
0.5
737
Tumor
0.5
435
Tumor
0.5
383
Tumor
0.5
533
Tumor
0.5
431
Tumor
0.4
535
Tumor
0.4
571
Tumor
0.4
423
Tumor
0.4
127
Tumor
0.4
123
Tumor
0.4
231
Tumor
0.4
573
Tumor
0.4
445
Tumor
0.4
545
Tumor
0.4
112
Tumor
0.4
171
Tumor
0.4
977
Tumor
0.3
517
Tumor
0.3
967
Tumor
0.3
447
Tumor
0.3
877
Tumor
0.3
921
Tumor
0.3
361
Tumor
0.3
393
Tumor
0.3
1021
Tumor
0.2
467
Tumor
0.2
297
Tumor
0.1
685
Tumor
0.1
443
Tumor
0.0
311
Tumor
0.0
861
Tumor
0.0
925
Tumor
0.0
527
Tumor
0.0
817
Tumor
-0.1
433
Tumor
-0.1
483
Tumor
-0.1
741
Tumor
-0.1
755
Tumor
-0.1
271
Tumor
-0.1
978
Normal
-0.1
314
Normal
-0.1
966
Normal
-0.2
278
Normal
-0.2
434
Normal
-0.2
715
Tumor
-0.2
937
Tumor
-0.2
641
Tumor
-0.2
975
Tumor
-0.2
135
Tumor
-0.2
471
Tumor
-0.2
1015
Tumor
-0.2
312
Normal
-0.2
257
Tumor
-0.2
217
Tumor
-0.3
563
Tumor
-0.3
147
Tumor
-0.3
187
Tumor
-0.3
697
Tumor
-0.3
227
Tumor
-0.3
421
Tumor
-0.3
415
Tumor
-0.3
451
Tumor
-0.3
557
Tumor
-0.3
185
Tumor
-0.3
221
Tumor
-0.3
1043
Tumor
-0.4
963
Tumor
-0.4
358
Normal
-0.4
917
Tumor
-0.4
498
Normal
-0.4
851
Tumor
-0.4
553
Tumor
-0.4
286
Normal
-0.4
332
Normal
-0.4
1045
Tumor
-0.4
261
Tumor
-0.4
113
Tumor
-0.4
477
Tumor
-0.4
455
Tumor
-0.4
137
Tumor
-0.5
422
Normal
-0.5
615
Tumor
-0.5
863
Tumor
-0.5
881
Tumor
-0.5
955
Tumor
-0.5
662
Normal
-0.5
713
Tumor
-0.5
284
Normal
-0.5
956
Normal
-0.5
191
Tumor
-0.5
366
Normal
-0.5
461
Tumor
-0.5
513
Tumor
-0.5
365
Tumor
-0.5
857
Tumor
-0.5
195
Tumor
-0.5
913
Tumor
-0.5
914
Normal
-0.5
428
Normal
-0.5
1014
Normal
-0.5
258
Normal
-0.6
162
Normal
-0.6
981
Tumor
-0.6
138
Normal
-0.6
916
Normal
-0.6
412
Normal
-0.6
958
Normal
-0.6
414
Normal
-0.6
867
Tumor
-0.6
384
Normal
-0.6
635
Tumor
-0.6
416
Normal
-0.6
468
Normal
-0.6
964
Normal
-0.6
188
Normal
-0.6
976
Normal
-0.6
1016
Normal
-0.6
356
Normal
-0.6
944
Normal
-0.6
444
Normal
-0.6
298
Normal
-0.6
664
Normal
-0.6
426
Normal
-0.6
353
Tumor
-0.6
1027
Tumor
-0.6
128
Normal
-0.6
224
Normal
-0.6
777
Tumor
-0.6
464
Normal
-0.6
466
Normal
-0.7
364
Normal
-0.7
212
Normal
-0.7
952
Normal
-0.7
648
Normal
-0.7
145
Tumor
-0.7
386
Normal
-0.7
494
Normal
-0.7
564
Normal
-0.7
481
Tumor
-0.7
368
Normal
-0.7
515
Tumor
-0.7
866
Normal
-0.7
223
Tumor
-0.7
666
Normal
-0.7
362
Normal
-0.7
388
Normal
-0.7
672
Normal
-0.7
744
Normal
-0.7
568
Normal
-0.7
954
Normal
-0.7
745
Tumor
-0.7
272
Normal
-0.7
984
Normal
-0.7
262
Normal
-0.7
352
Normal
-0.7
268
Normal
-0.7
823
Tumor
-0.7
558
Normal
-0.7
738
Normal
-0.8
172
Normal
-0.8
228
Normal
-0.8
982
Normal
-0.8
574
Normal
-0.8
968
Normal
-0.8
911
Tumor
-0.8
424
Normal
-0.8
363
Tumor
-0.8
214
Normal
-0.8
136
Normal
-0.8
884
Normal
-0.8
126
Normal
-0.8
514
Normal
-0.8
1042
Normal
-0.8
354
Normal
-0.8
617
Tumor
-0.8
785
Tumor
-0.8
446
Normal
-0.8
432
Normal
-0.8
114
Normal
-0.8
488
Normal
-0.8
918
Normal
-0.8
915
Tumor
-0.8
518
Normal
-0.8
132
Normal
-0.8
456
Normal
-0.8
474
Normal
-0.8
627
Tumor
-0.8
526
Normal
-0.9
516
Normal
-0.9
528
Normal
-0.9
628
Normal
-0.9
728
Normal
-0.9
864
Normal
-0.9
616
Normal
-0.9
723
Tumor
-0.9
376
Normal
-0.9
874
Normal
-0.9
524
Normal
-0.9
492
Normal
-0.9
344
Normal
-0.9
232
Normal
-0.9
938
Normal
-0.9
148
Normal
-0.9
436
Normal
-0.9
328
Normal
-0.9
484
Normal
-0.9
926
Normal
-0.9
392
Normal
-0.9
186
Normal
-0.9
572
Normal
-1.0
146
Normal
-1.0
396
Normal
-1.0
852
Normal
-1.0
534
Normal
-1.0
192
Normal
-1.0
394
Normal
-1.0
721
Tumor
-1.0
868
Normal
-1.0
124
Normal
-1.0
342
Normal
-1.0
924
Normal
-1.0
922
Normal
-1.0
696
Normal
-1.0
142
Normal
-1.0
742
Normal
-1.0
196
Normal
-1.0
1041
Tumor
-1.0
448
Normal
-1.0
878
Normal
-1.1
714
Normal
-1.1
716
Normal
-1.1
536
Normal
-1.1
482
Normal
-1.1
546
Normal
-1.1
862
Normal
-1.1
395
Tumor
-1.1
1026
Normal
-1.1
618
Normal
-1.1
1044
Normal
-1.1
722
Normal
-1.1
858
Normal
-1.1
472
Normal
-1.1
478
Normal
-1.1
327
Tumor
-1.1
452
Normal
-1.2
1032
Normal
-1.2
1025
Tumor
-1.2
554
Normal
-1.2
538
Normal
-1.2
1022
Normal
-1.2
1028
Normal
-1.2
111
Normal
-1.2
1046
Normal
-1.3
698
Normal
-1.3
642
Normal
-1.3
222
Normal
-1.3
816
Normal
-1.3
912
Normal
-1.3
636
Normal
-1.3
218
Normal
-1.3
462
Normal
-1.3
818
Normal
-1.3
686
Normal
-1.4
824
Normal
-1.4
756
Normal
-1.4
882
Normal
-1.4
786
Normal
-1.5
746
Normal
-1.6
778
Normal
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
