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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
48.8
nTPM
HPA Brain:
125.8
nTPM
GTEx:
48.8
nTPM
FANTOM5:
47.2
Scaled Tags Per Million
Pig:
40.9
nTPM
Mouse:
1.6
nTPM
Allen mouse:
0.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
125.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 101.3
2586
Male, age 75, left hemisphere
164.4
2828
Female, age 72, unknown
155.5
2666
Male, age 74, left hemisphere
124.4
1827
Male, age 72, unknown
101.3
2019
Male, age 18, unknown
98.4
2411
Female, age 72, unknown
84.2
1833
Male, age 53, unknown
81.3
1830
Male, age 51, unknown
77.0
1870
Female, age 42, unknown
65.3
2219
Male, age 76, both hemispheres
61.4
Dorsal raphe nucleus nTPM: 90.8
2016
Female, age 72, unknown
104.4
1828
Male, age 53, unknown
102.3
2298
Female, age 72, unknown
85.6
2750
Male, age 76, both hemispheres
82.1
2047
Male, age 72, unknown
79.5
Inferior colliculus nTPM: 77.5
1848
Female, age 42, unknown
85.2
1890
Male, age 53, unknown
81.0
2849
Male, age 72, unknown
77.6
2097
Female, age 72, unknown
66.1
Median raphe nucleus nTPM: 80.6
2220
Male, age 76, midline
80.6
Periaquaductal grey, anterior nTPM: 93.7
2502
Female, age 75, unknown
112.7
1795
Male, age 51, unknown
99.8
1947
Male, age 18, unknown
68.5
Periaquaductal grey, dorsal nTPM: 106.6
1840
Male, age 53, unknown
114.2
2850
Male, age 76, both hemispheres
108.1
2464
Female, age 72, unknown
106.2
1831
Male, age 72, unknown
98.0
Periaquaductal grey, lateral nTPM: 105.6
2140
Male, age 76, both hemispheres
130.7
2053
Male, age 18, unknown
107.6
2272
Male, age 74, both hemispheres
78.5
Pretectal area nTPM: 120.8
2007
Male, age 72, unknown
179.9
1816
Male, age 51, unknown
168.8
1944
Female, age 72, unknown
156.3
1817
Female, age 42, unknown
154.8
1815
Male, age 53, unknown
141.3
2316
Male, age 76, right hemisphere
112.0
2667
Female, age 75, unknown
95.3
2825
Male, age 18, unknown
85.7
2224
Female, age 72, unknown
83.1
2407
Male, age 75, both hemispheres
77.7
2273
Male, age 74, both hemispheres
73.9
Red nucleus nTPM: 95.5
2588
Male, age 74, left hemisphere
124.4
2503
Female, age 72, unknown
118.0
2823
Male, age 76, right hemisphere
115.0
2785
Male, age 18, unknown
105.6
2725
Female, age 75, unknown
98.3
1865
Male, age 51, unknown
91.3
1821
Female, age 72, unknown
88.2
1904
Male, age 53, unknown
83.9
1954
Female, age 42, unknown
81.7
2769
Male, age 72, unknown
81.2
2227
Male, age 72, unknown
79.3
2584
Male, age 75, left hemisphere
79.3
Substantia nigra nTPM: 125.8
2699
Male, age 18, unknown
156.7
2665
Male, age 74, both hemispheres
152.3
1916
Female, age 42, unknown
151.9
1851
Male, age 51, unknown
135.7
2590
Female, age 75, unknown
124.7
2409
Female, age 72, unknown
124.4
1889
Female, age 72, unknown
114.2
2583
Male, age 75, right hemisphere
109.0
2241
Male, age 72, unknown
101.5
1941
Male, age 53, unknown
88.2
Superior colliculus nTPM: 104.8
2087
Female, age 72, unknown
138.6
1995
Male, age 72, unknown
128.0
2261
Male, age 18, unknown
121.8
1796
Male, age 53, unknown
117.2
2664
Male, age 75, both hemispheres
109.3
2668
Female, age 75, unknown
95.9
1913
Female, age 42, unknown
95.2
2587
Male, age 74, left hemisphere
90.3
1839
Male, age 51, unknown
78.7
1895
Male, age 76, right hemisphere
72.6
Ventral tegmental area nTPM: 95.2
2410
Female, age 72, unknown
108.3
2218
Male, age 76, both hemispheres
101.2
1915
Female, age 42, unknown
100.4
2021
Male, age 53, unknown
98.3
1942
Male, age 51, unknown
90.6
2223
Female, age 72, unknown
72.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
48.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 48.8
Samples: 139
Max nTPM: 150.1
Min nTPM: 6.0
Std nTPM: 25.6
Median nTPM: 45.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
150.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
136.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
111.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
110.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
105.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
101.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
96.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
96.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
96.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
94.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
94.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
88.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
82.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
81.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
80.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
80.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
78.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
75.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
75.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
74.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
71.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
71.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
70.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
70.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
70.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
69.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
69.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
67.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
67.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
66.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
66.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
65.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
64.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
63.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
60.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
60.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
60.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
59.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
58.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
58.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
58.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
57.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
57.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
57.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
57.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
57.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
55.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
54.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
54.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
54.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
54.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
53.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
52.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
52.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
52.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
51.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
51.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
49.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
49.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
49.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
48.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
47.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
47.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
47.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
47.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
46.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
45.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
45.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
45.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
45.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
44.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
43.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
43.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
42.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
40.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
40.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
40.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
39.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
39.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
39.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
38.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
38.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
38.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
38.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
38.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
37.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
37.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
36.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
36.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
36.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
36.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
35.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
35.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
35.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
34.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
34.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
33.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
33.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
33.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
33.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
31.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
30.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
29.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
29.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
29.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
29.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
29.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
28.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
28.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
28.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
28.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
27.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
26.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
23.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
23.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
23.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
23.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
22.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
22.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
22.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
22.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
21.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
21.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
20.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
19.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
18.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
17.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
15.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
15.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
14.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
13.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
13.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
12.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
11.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
7.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
6.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 1.6
Samples: 4
Max nTPM: 2.0
Min nTPM: 1.3
Sample A
Male
1.7
Sample B
Male
2.0
Sample C
Female
1.3
Sample D
Female
1.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.