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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
24.5
nTPM
HPA Brain:
87.1
nTPM
GTEx:
24.5
nTPM
FANTOM5:
79.5
Scaled Tags Per Million
Pig:
14.8
nTPM
Mouse:
1.2
nTPM
Allen mouse:
0.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA008704
Glial cells
Medium
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 87.1
2148
Female, age 91, left hemisphere
110.7
2529
Female, age 94, left hemisphere
95.9
1855
Male, age 76, left hemisphere
89.2
1911
Female, age 85, right hemisphere
81.4
1898
Male, age 80, left hemisphere
80.8
2621
Female, age 67, right hemisphere
64.6
Dentate gyrus nTPM: 69.3
2528
Male, age 74, both hemispheres
88.9
2246
Female, age 85, both hemispheres
80.5
2530
Female, age 94, left hemisphere
69.0
1927
Female, age 91, both hemispheres
61.1
2010
Male, age 76, both hemispheres
58.2
2531
Female, age 67, both hemispheres
58.0
Entorhinal gyrus nTPM: 69.4
2686
Male, age 75, right hemisphere
94.1
2117
Female, age 91, right hemisphere
93.2
1787
Male, age 76, left hemisphere
62.6
1938
Female, age 85, left hemisphere
61.3
2764
Male, age 80, right hemisphere
55.4
2613
Female, age 94, left hemisphere
49.9
Hippocampus, CA1 nTPM: 77.7
2527
Male, age 74, both hemispheres
107.3
1873
Female, age 85, both hemispheres
80.6
2082
Female, age 91, right hemisphere
78.5
2045
Male, age 76, both hemispheres
70.7
2749
Male, age 80, left hemisphere
51.3
Hippocampus, CA2 nTPM: 68.3
2113
Female, age 91, right hemisphere
86.6
2249
Male, age 74, both hemispheres
74.1
1963
Male, age 80, left hemisphere
71.7
1940
Female, age 85, left hemisphere
66.8
2437
Female, age 94, left hemisphere
64.7
1892
Male, age 76, both hemispheres
45.7
Hippocampus, CA3 nTPM: 67.7
2861
Female, age 67, both hemispheres
90.3
1891
Female, age 85, both hemispheres
78.1
2620
Female, age 94, left hemisphere
67.2
2436
Male, age 74, both hemispheres
62.4
2137
Male, age 80, left hemisphere
57.1
1867
Male, age 76, both hemispheres
51.0
Parahippocampal cortex nTPM: 67.4
2692
Male, age 74, both hemispheres
107.3
2622
Female, age 67, right hemisphere
82.3
2250
Female, age 67, right hemisphere
74.2
2018
Male, age 76, both hemispheres
69.0
2245
Female, age 91, both hemispheres
66.3
1933
Female, age 85, both hemispheres
60.1
1990
Female, age 91, right hemisphere
60.1
1850
Male, age 80, both hemispheres
56.7
2532
Female, age 72, left hemisphere
49.4
2693
Female, age 94, both hemispheres
48.3
Perirhinal gyrus nTPM: 50.2
1847
Female, age 91, left hemisphere
58.4
1794
Male, age 80, right hemisphere
55.2
2521
Female, age 94, right hemisphere
51.2
1841
Female, age 85, right hemisphere
44.7
2848
Male, age 76, right hemisphere
41.7
Subiculum nTPM: 79.0
2729
Female, age 91, right hemisphere
115.5
2619
Male, age 74, both hemispheres
97.4
2438
Female, age 94, left hemisphere
73.4
1901
Male, age 80, both hemispheres
66.8
2042
Male, age 76, both hemispheres
63.0
1977
Female, age 85, both hemispheres
58.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 24.5
Samples: 197
Max nTPM: 76.3
Min nTPM: 6.3
Std nTPM: 12.1
Median nTPM: 21.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
76.3
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
67.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
66.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
62.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
59.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
53.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
52.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
52.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
47.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
45.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
45.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
45.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
44.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
43.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
43.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
43.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
42.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
40.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
39.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
39.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
39.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
39.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
38.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
38.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
37.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
37.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
36.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
36.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
36.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
36.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
35.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
34.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
34.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
34.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
34.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
32.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
32.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
32.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
32.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
32.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
31.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
31.5
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
31.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
31.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
31.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
31.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
31.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
31.1
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
31.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
30.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
30.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
30.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
29.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
29.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
29.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
28.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
28.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
28.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
28.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
28.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
28.2
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
28.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
27.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
27.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
27.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
27.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
27.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
27.0
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
26.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
26.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
26.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
26.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
26.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
26.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
26.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
26.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
26.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
26.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
26.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
26.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
25.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
25.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
25.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
25.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
25.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
24.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
24.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
23.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
23.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
23.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
23.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
22.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
22.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
22.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
22.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
22.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
21.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
21.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
21.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
21.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
21.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
20.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
20.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
20.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
20.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
20.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
20.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
20.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
20.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
20.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
20.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
19.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
19.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
19.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
19.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
19.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
19.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
19.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
19.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
18.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
18.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
18.7
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
18.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
18.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
18.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
18.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
18.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
18.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
18.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
18.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
17.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
17.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
17.8
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
17.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
17.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
17.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
17.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
17.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
17.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
16.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
16.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
16.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
16.3
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
16.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
16.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
15.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
15.6
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
15.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
15.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
15.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
15.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
14.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
14.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
14.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
14.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
14.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
14.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
14.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
13.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
13.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
13.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
13.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
13.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
13.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
13.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
12.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
12.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
12.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
12.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
12.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
12.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
12.5
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
12.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
12.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
12.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
11.9
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
11.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
11.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
10.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
10.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
10.5
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
10.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
10.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
10.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
10.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
10.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
10.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
9.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
9.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
9.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
9.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
8.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
8.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
7.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
6.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
6.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1.2
Samples: 4
Max nTPM: 1.6
Min nTPM: 1.0
Sample A
Male
1.1
Sample B
Male
1.2
Sample C
Female
1.6
Sample D
Female
1.0
Hippocampal formation nTPM: 0.8
Samples: 4
Max nTPM: 1.4
Min nTPM: 0.4
Sample A
Male
0.4
Sample B
Male
1.4
Sample C
Female
0.6
Sample D
Female
0.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.