MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.0 nTPM
HPA Brain:5.5 nTPM
GTEx:1.0 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:7.7 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 5.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.6
2219 Male, age 76, both hemispheres 4.9
1827 Male, age 72, unknown 3.9
2411 Female, age 72, unknown 3.9
2666 Male, age 74, left hemisphere 3.9
1833 Male, age 53, unknown 3.6
2019 Male, age 18, unknown 3.6
1830 Male, age 51, unknown 3.3
1870 Female, age 42, unknown 3.2
2586 Male, age 75, left hemisphere 3.2
2828 Female, age 72, unknown 2.6
Dorsal raphe nucleus
nTPM: 4.0
2047 Male, age 72, unknown 4.8
2298 Female, age 72, unknown 4.0
2016 Female, age 72, unknown 3.9
1828 Male, age 53, unknown 3.8
2750 Male, age 76, both hemispheres 3.6
Inferior colliculus
nTPM: 4.6
2097 Female, age 72, unknown 5.5
1890 Male, age 53, unknown 4.5
2849 Male, age 72, unknown 4.3
1848 Female, age 42, unknown 4.0
Median raphe nucleus
nTPM: 4.4
2220 Male, age 76, midline 4.4
Periaquaductal grey, anterior
nTPM: 4.6
2502 Female, age 75, unknown 5.3
1947 Male, age 18, unknown 4.9
1795 Male, age 51, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 4.2
1840 Male, age 53, unknown 4.6
2464 Female, age 72, unknown 4.3
2850 Male, age 76, both hemispheres 4.2
1831 Male, age 72, unknown 3.7
Periaquaductal grey, lateral
nTPM: 4.0
2053 Male, age 18, unknown 4.3
2272 Male, age 74, both hemispheres 4.0
2140 Male, age 76, both hemispheres 3.8
Pretectal area
nTPM: 3.8
2825 Male, age 18, unknown 4.9
2224 Female, age 72, unknown 4.4
2667 Female, age 75, unknown 4.3
2273 Male, age 74, both hemispheres 4.0
2407 Male, age 75, both hemispheres 3.9
1816 Male, age 51, unknown 3.7
1944 Female, age 72, unknown 3.5
2007 Male, age 72, unknown 3.4
1817 Female, age 42, unknown 3.3
2316 Male, age 76, right hemisphere 3.3
1815 Male, age 53, unknown 3.2
Red nucleus
nTPM: 5.5
1954 Female, age 42, unknown 9.7
1821 Female, age 72, unknown 9.1
1904 Male, age 53, unknown 6.7
2769 Male, age 72, unknown 5.9
2227 Male, age 72, unknown 5.8
1865 Male, age 51, unknown 5.2
2823 Male, age 76, right hemisphere 5.2
2503 Female, age 72, unknown 4.8
2588 Male, age 74, left hemisphere 4.2
2584 Male, age 75, left hemisphere 3.6
2725 Female, age 75, unknown 3.2
2785 Male, age 18, unknown 3.0
Substantia nigra
nTPM: 4.6
2241 Male, age 72, unknown 6.3
2409 Female, age 72, unknown 6.1
1916 Female, age 42, unknown 5.1
2699 Male, age 18, unknown 4.8
1851 Male, age 51, unknown 4.7
2665 Male, age 74, both hemispheres 4.2
1941 Male, age 53, unknown 4.1
2590 Female, age 75, unknown 4.1
1889 Female, age 72, unknown 3.6
2583 Male, age 75, right hemisphere 3.4
Superior colliculus
nTPM: 3.6
1895 Male, age 76, right hemisphere 4.8
2668 Female, age 75, unknown 4.8
2664 Male, age 75, both hemispheres 4.3
1839 Male, age 51, unknown 4.1
2261 Male, age 18, unknown 3.9
1796 Male, age 53, unknown 3.4
2087 Female, age 72, unknown 3.3
2587 Male, age 74, left hemisphere 3.1
1913 Female, age 42, unknown 2.1
1995 Male, age 72, unknown 1.9
Ventral tegmental area
nTPM: 4.1
1942 Male, age 51, unknown 4.6
1915 Female, age 42, unknown 4.1
2218 Male, age 76, both hemispheres 4.1
2021 Male, age 53, unknown 4.0
2410 Female, age 72, unknown 4.0
2223 Female, age 72, unknown 3.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.0
Samples: 139

Max nTPM: 3.8
Min nTPM: 0.1
Std nTPM: 0.6
Median nTPM: 0.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 3.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 2.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 2.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 2.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 2.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 2.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 2.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.1
Sample A Female 6.1
Sample B Female 6.8
Sample C Male 8.4
Sample D Male 10.7
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 9.3
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 8.9
Sample C Male 5.4
Sample D Male 9.3
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 8.5
Min nTPM: 6.8
Sample B Female 8.1
Sample C Male 6.8
Sample D Male 8.5
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.0
Sample A Female 5.2
Sample B Female 4.0
Sample C Male 6.4
Sample D Male 8.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 8.5
Sample C Female 7.2
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68667246 Antisense, RP_050201_01_H07, Mouse strain C57BL/6J (56 days, male) 0.6

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