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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDCD2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
55.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
41.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
39.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
38.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
34.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
31.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
25.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
25.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
24.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
23.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
19.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDCD2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.8
957
Tumor
0.7
147
Tumor
0.7
937
Tumor
0.7
387
Tumor
0.6
211
Tumor
0.6
425
Tumor
0.6
123
Tumor
0.6
412
Normal
0.5
663
Tumor
0.5
185
Tumor
0.4
428
Normal
0.4
546
Normal
0.4
713
Tumor
0.4
951
Tumor
0.4
395
Tumor
0.4
283
Tumor
0.4
368
Normal
0.4
414
Normal
0.4
983
Tumor
0.4
424
Normal
0.4
1021
Tumor
0.3
384
Normal
0.3
943
Tumor
0.3
534
Normal
0.3
413
Tumor
0.3
367
Tumor
0.3
647
Tumor
0.3
664
Normal
0.3
881
Tumor
0.3
186
Normal
0.3
467
Tumor
0.3
356
Normal
0.3
661
Tumor
0.3
528
Normal
0.3
525
Tumor
0.3
697
Tumor
0.3
911
Tumor
0.2
553
Tumor
0.2
188
Normal
0.2
113
Tumor
0.2
421
Tumor
0.2
527
Tumor
0.2
665
Tumor
0.2
524
Normal
0.2
912
Normal
0.2
422
Normal
0.2
447
Tumor
0.2
187
Tumor
0.2
416
Normal
0.2
391
Tumor
0.2
533
Tumor
0.2
535
Tumor
0.2
363
Tumor
0.2
967
Tumor
0.2
537
Tumor
0.2
877
Tumor
0.2
672
Normal
0.2
423
Tumor
0.1
883
Tumor
0.1
554
Normal
0.1
392
Normal
0.1
213
Tumor
0.1
817
Tumor
0.1
394
Normal
0.1
376
Normal
0.1
882
Normal
0.1
366
Normal
0.1
427
Tumor
0.1
224
Normal
0.1
536
Normal
0.1
364
Normal
0.1
145
Tumor
0.1
977
Tumor
0.1
124
Normal
0.1
388
Normal
0.1
884
Normal
0.1
724
Normal
0.1
112
Tumor
0.1
1043
Tumor
0.1
386
Normal
0.1
816
Normal
0.1
286
Normal
0.1
221
Tumor
0.1
223
Tumor
0.1
148
Normal
0.1
385
Tumor
0.1
396
Normal
0.1
355
Tumor
0.0
966
Normal
0.0
1022
Normal
0.0
426
Normal
0.0
914
Normal
0.0
982
Normal
0.0
217
Tumor
0.0
861
Tumor
0.0
362
Normal
0.0
1026
Normal
0.0
172
Normal
0.0
111
Normal
0.0
212
Normal
0.0
1013
Tumor
0.0
227
Tumor
0.0
824
Normal
0.0
968
Normal
0.0
463
Tumor
0.0
722
Normal
0.0
393
Tumor
0.0
162
Normal
0.0
1044
Normal
0.0
958
Normal
0.0
518
Normal
0.0
1045
Tumor
0.0
695
Tumor
0.0
1015
Tumor
0.0
978
Normal
N/A
671
Tumor
0.0
516
Normal
0.0
975
Tumor
0.0
1031
Tumor
0.0
938
Normal
0.0
327
Tumor
0.0
1028
Normal
0.0
913
Tumor
0.0
361
Tumor
0.0
142
Normal
0.0
451
Tumor
0.0
662
Normal
0.0
878
Normal
0.0
1042
Normal
0.0
138
Normal
0.0
952
Normal
0.0
132
Normal
-0.1
648
Normal
-0.1
868
Normal
-0.1
666
Normal
-0.1
538
Normal
-0.1
858
Normal
-0.1
515
Tumor
-0.1
526
Normal
-0.1
964
Normal
-0.1
448
Normal
-0.1
328
Normal
-0.1
1014
Normal
-0.1
955
Tumor
-0.1
696
Normal
-0.1
698
Normal
-0.1
741
Tumor
-0.1
131
Tumor
-0.1
738
Normal
-0.1
715
Tumor
-0.1
984
Normal
-0.1
455
Tumor
-0.1
1046
Normal
-0.1
865
Tumor
-0.1
285
Tumor
-0.1
514
Normal
-0.1
944
Normal
-0.1
716
Normal
-0.1
126
Normal
-0.1
456
Normal
-0.1
1016
Normal
-0.1
114
Normal
-0.1
956
Normal
-0.1
721
Tumor
-0.1
954
Normal
-0.2
852
Normal
-0.2
873
Tumor
-0.2
851
Tumor
-0.2
823
Tumor
-0.2
545
Tumor
-0.2
136
Normal
-0.2
815
Tumor
-0.2
125
Tumor
-0.2
963
Tumor
-0.2
146
Normal
-0.2
742
Normal
-0.2
191
Tumor
-0.2
1032
Normal
-0.2
818
Normal
-0.2
714
Normal
-0.2
864
Normal
-0.2
465
Tumor
-0.2
284
Normal
-0.2
953
Tumor
-0.2
743
Tumor
-0.2
686
Normal
-0.2
365
Tumor
-0.2
128
Normal
-0.3
375
Tumor
-0.3
137
Tumor
-0.3
127
Tumor
-0.3
866
Normal
-0.3
976
Normal
-0.3
161
Tumor
-0.3
383
Tumor
-0.3
464
Normal
-0.3
867
Tumor
-0.3
171
Tumor
-0.3
195
Tumor
-0.3
135
Tumor
-0.4
1025
Tumor
-0.4
468
Normal
-0.4
981
Tumor
-0.4
466
Normal
-0.4
874
Normal
-0.4
228
Normal
-0.4
141
Tumor
-0.4
862
Normal
-0.4
863
Tumor
-0.4
1027
Tumor
-0.4
513
Tumor
-0.4
218
Normal
-0.4
517
Tumor
-0.4
1041
Tumor
-0.5
222
Normal
-0.5
723
Tumor
-0.5
728
Normal
-0.5
857
Tumor
-0.5
411
Tumor
-0.5
214
Normal
-0.5
685
Tumor
-0.6
727
Tumor
-0.6
737
Tumor
-0.6
196
Normal
-0.7
192
Normal
-0.7
523
Tumor
-0.9
415
Tumor
-1.1
452
Normal
-1.1
744
Normal
-1.1
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
