We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBD3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MBD3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
121.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
109.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
88.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
85.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
72.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
69.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
52.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
51.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
49.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
47.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
44.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
42.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
40.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
34.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
34.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
34.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
33.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
29.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
29.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
27.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
26.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
25.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
25.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
25.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
23.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
23.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
23.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.9
661
Tumor
1.5
285
Tumor
1.2
131
Tumor
1.1
331
Tumor
1.1
943
Tumor
1.0
865
Tumor
1.0
965
Tumor
0.9
671
Tumor
0.9
463
Tumor
0.9
877
Tumor
0.9
211
Tumor
0.8
411
Tumor
0.8
737
Tumor
0.8
161
Tumor
0.8
983
Tumor
0.8
283
Tumor
0.8
427
Tumor
0.8
497
Tumor
0.8
227
Tumor
0.8
447
Tumor
0.8
545
Tumor
0.8
351
Tumor
0.8
881
Tumor
0.8
1031
Tumor
0.7
413
Tumor
0.7
967
Tumor
0.7
727
Tumor
0.7
957
Tumor
0.7
951
Tumor
0.7
517
Tumor
0.7
297
Tumor
0.7
923
Tumor
0.6
663
Tumor
0.6
523
Tumor
0.6
724
Normal
0.6
1013
Tumor
0.6
355
Tumor
0.6
921
Tumor
0.6
357
Tumor
0.5
221
Tumor
0.5
525
Tumor
0.5
431
Tumor
0.5
953
Tumor
0.5
641
Tumor
0.5
635
Tumor
0.5
813
Tumor
0.5
277
Tumor
0.5
977
Tumor
0.5
375
Tumor
0.5
367
Tumor
0.4
363
Tumor
0.4
391
Tumor
0.4
785
Tumor
0.4
975
Tumor
0.4
533
Tumor
0.4
435
Tumor
0.4
1021
Tumor
0.3
425
Tumor
0.3
135
Tumor
0.3
455
Tumor
0.3
814
Normal
0.3
313
Tumor
0.3
817
Tumor
0.3
361
Tumor
0.3
665
Tumor
0.3
393
Tumor
0.3
385
Tumor
0.3
487
Tumor
0.3
467
Tumor
0.3
461
Tumor
0.3
861
Tumor
0.3
387
Tumor
0.3
685
Tumor
0.2
713
Tumor
0.2
815
Tumor
0.2
535
Tumor
0.2
137
Tumor
0.2
567
Tumor
0.2
721
Tumor
0.2
937
Tumor
0.2
515
Tumor
0.2
963
Tumor
0.2
343
Tumor
0.2
383
Tumor
0.2
147
Tumor
0.2
883
Tumor
0.2
563
Tumor
0.2
443
Tumor
0.2
267
Tumor
0.2
917
Tumor
0.2
777
Tumor
0.2
755
Tumor
0.1
537
Tumor
0.1
915
Tumor
0.1
473
Tumor
0.1
125
Tumor
0.1
857
Tumor
0.1
863
Tumor
0.1
141
Tumor
0.1
112
Tumor
0.1
697
Tumor
0.1
647
Tumor
0.1
493
Tumor
0.1
384
Normal
0.1
527
Tumor
0.1
1015
Tumor
0.1
617
Tumor
0.1
1043
Tumor
0.1
365
Tumor
0.1
571
Tumor
0.1
1041
Tumor
0.1
745
Tumor
0.1
695
Tumor
0.1
271
Tumor
0.0
415
Tumor
0.0
498
Normal
0.0
715
Tumor
0.0
433
Tumor
0.0
873
Tumor
0.0
741
Tumor
0.0
981
Tumor
0.0
491
Tumor
0.0
823
Tumor
0.0
536
Normal
0.0
311
Tumor
0.0
483
Tumor
0.0
327
Tumor
0.0
913
Tumor
0.0
187
Tumor
0.0
867
Tumor
0.0
958
Normal
0.0
423
Tumor
0.0
465
Tumor
0.0
223
Tumor
0.0
123
Tumor
0.0
756
Normal
0.0
866
Normal
0.0
1032
Normal
0.0
492
Normal
0.0
1025
Tumor
0.0
421
Tumor
0.0
185
Tumor
-0.1
851
Tumor
-0.1
742
Normal
-0.1
362
Normal
-0.1
341
Tumor
-0.1
146
Normal
-0.1
723
Tumor
-0.1
111
Normal
-0.1
558
Normal
-0.1
451
Tumor
-0.1
213
Tumor
-0.1
376
Normal
-0.1
127
Tumor
-0.1
911
Tumor
-0.1
1014
Normal
-0.1
471
Tumor
-0.1
573
Tumor
-0.1
524
Normal
-0.1
368
Normal
-0.1
412
Normal
-0.1
778
Normal
-0.1
353
Tumor
-0.1
444
Normal
-0.1
912
Normal
-0.1
738
Normal
-0.1
445
Tumor
-0.1
113
Tumor
-0.1
696
Normal
-0.1
488
Normal
-0.1
966
Normal
-0.1
964
Normal
-0.1
1044
Normal
-0.1
142
Normal
-0.1
716
Normal
-0.1
553
Tumor
-0.1
1042
Normal
-0.1
878
Normal
-0.1
1028
Normal
-0.1
366
Normal
-0.1
268
Normal
-0.1
352
Normal
-0.1
513
Tumor
-0.2
484
Normal
-0.2
976
Normal
-0.2
672
Normal
-0.2
191
Tumor
-0.2
364
Normal
-0.2
386
Normal
-0.2
884
Normal
-0.2
284
Normal
-0.2
916
Normal
-0.2
858
Normal
-0.2
195
Tumor
-0.2
217
Tumor
-0.2
145
Tumor
-0.2
852
Normal
-0.2
546
Normal
-0.2
494
Normal
-0.2
124
Normal
-0.2
481
Tumor
-0.2
538
Normal
-0.2
955
Tumor
-0.2
188
Normal
-0.2
818
Normal
-0.2
874
Normal
-0.2
448
Normal
-0.2
136
Normal
-0.2
722
Normal
-0.2
978
Normal
-0.2
528
Normal
-0.2
416
Normal
-0.2
1016
Normal
-0.2
232
Normal
-0.2
944
Normal
-0.2
1046
Normal
-0.2
698
Normal
-0.2
744
Normal
-0.2
786
Normal
-0.2
572
Normal
-0.2
298
Normal
-0.2
262
Normal
-0.2
186
Normal
-0.2
984
Normal
-0.2
714
Normal
-0.2
864
Normal
-0.2
1027
Tumor
-0.2
1026
Normal
-0.2
728
Normal
-0.2
952
Normal
-0.2
924
Normal
-0.2
926
Normal
-0.2
434
Normal
-0.2
477
Tumor
-0.2
516
Normal
-0.2
918
Normal
-0.2
968
Normal
-0.2
615
Tumor
-0.2
534
Normal
-0.2
356
Normal
-0.2
228
Normal
-0.2
328
Normal
-0.2
1022
Normal
-0.2
882
Normal
-0.2
212
Normal
-0.2
746
Normal
-0.3
312
Normal
-0.3
261
Tumor
-0.3
518
Normal
-0.3
114
Normal
-0.3
686
Normal
-0.3
564
Normal
-0.3
224
Normal
-0.3
526
Normal
-0.3
1045
Tumor
-0.3
648
Normal
-0.3
478
Normal
-0.3
666
Normal
-0.3
956
Normal
-0.3
954
Normal
-0.3
662
Normal
-0.3
171
Tumor
-0.3
514
Normal
-0.3
627
Tumor
-0.3
128
Normal
-0.3
132
Normal
-0.3
354
Normal
-0.3
396
Normal
-0.3
344
Normal
-0.3
392
Normal
-0.3
428
Normal
-0.3
824
Normal
-0.3
982
Normal
-0.3
557
Tumor
-0.3
148
Normal
-0.3
388
Normal
-0.3
914
Normal
-0.3
446
Normal
-0.3
474
Normal
-0.3
922
Normal
-0.3
314
Normal
-0.3
278
Normal
-0.3
358
Normal
-0.3
426
Normal
-0.3
394
Normal
-0.3
868
Normal
-0.3
424
Normal
-0.3
422
Normal
-0.3
414
Normal
-0.3
574
Normal
-0.3
628
Normal
-0.3
162
Normal
-0.4
462
Normal
-0.4
192
Normal
-0.4
472
Normal
-0.4
862
Normal
-0.4
464
Normal
-0.4
925
Tumor
-0.4
938
Normal
-0.4
126
Normal
-0.4
456
Normal
-0.4
616
Normal
-0.4
172
Normal
-0.4
332
Normal
-0.4
342
Normal
-0.4
436
Normal
-0.4
554
Normal
-0.4
568
Normal
-0.4
466
Normal
-0.4
664
Normal
-0.4
214
Normal
-0.4
395
Tumor
-0.4
286
Normal
-0.4
642
Normal
-0.4
258
Normal
-0.5
618
Normal
-0.5
468
Normal
-0.5
482
Normal
-0.5
218
Normal
-0.5
272
Normal
-0.5
222
Normal
-0.5
138
Normal
-0.5
257
Tumor
-0.5
452
Normal
-0.5
636
Normal
-0.5
432
Normal
-0.5
196
Normal
-0.5
816
Normal
-0.6
231
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
