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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BUD23 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
147.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
144.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
143.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
132.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
131.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
126.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
122.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
119.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
118.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
115.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
115.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
114.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
113.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
113.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
112.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
111.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
109.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
104.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
104.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
104.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
102.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
100.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
99.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
97.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
97.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
97.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
95.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
94.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
94.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
93.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
93.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
91.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
90.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
90.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
89.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
88.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
88.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
88.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
87.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
86.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
86.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
85.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
84.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
83.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
82.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
82.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
82.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
82.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
82.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
82.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
81.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
80.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
80.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
80.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
79.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
78.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
78.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
77.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
77.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
77.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
77.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
76.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
76.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
75.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
75.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
75.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
75.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
74.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
74.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
73.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
73.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
73.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
73.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
73.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
71.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
70.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
70.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
70.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
69.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
69.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
69.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
69.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
68.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
68.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
68.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
68.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
67.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
67.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
67.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
67.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
67.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
67.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
66.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
66.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
66.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
66.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
66.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
65.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
65.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
65.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
65.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
65.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
64.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
64.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
64.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
64.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
64.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
64.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
64.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
63.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
63.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
63.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
63.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
63.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
62.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
62.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
61.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
61.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
61.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
61.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
60.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
60.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
60.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
60.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
60.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
60.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
60.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
59.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
59.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
59.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
59.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
59.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
59.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
59.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
58.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
58.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
58.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
57.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
57.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
57.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
56.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
55.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
55.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
55.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
55.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
54.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
54.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
54.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
54.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
54.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
53.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
53.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
53.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
53.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
52.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
52.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
52.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
51.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
51.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
51.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
51.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
51.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
51.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
50.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
50.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
49.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
48.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
48.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
48.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
48.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
48.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
48.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
47.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
47.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
46.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
45.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
45.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
45.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
44.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
43.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
43.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
43.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
43.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
43.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
43.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
43.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
42.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
42.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
42.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
42.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
41.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
41.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
40.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
40.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
39.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
39.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
39.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
38.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
37.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
37.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
37.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
37.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
36.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
36.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
35.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
34.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
29.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
28.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
28.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
27.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
26.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.3
123
Tumor
1.2
425
Tumor
1.2
911
Tumor
1.0
1021
Tumor
1.0
685
Tumor
1.0
387
Tumor
0.8
661
Tumor
0.7
977
Tumor
0.7
497
Tumor
0.7
1027
Tumor
0.7
965
Tumor
0.6
573
Tumor
0.6
957
Tumor
0.6
191
Tumor
0.6
537
Tumor
0.6
137
Tumor
0.5
635
Tumor
0.5
1041
Tumor
0.5
313
Tumor
0.5
433
Tumor
0.5
385
Tumor
0.5
297
Tumor
0.5
483
Tumor
0.5
411
Tumor
0.5
647
Tumor
0.5
217
Tumor
0.5
391
Tumor
0.5
213
Tumor
0.5
481
Tumor
0.4
951
Tumor
0.4
135
Tumor
0.4
445
Tumor
0.4
127
Tumor
0.4
261
Tumor
0.4
861
Tumor
0.4
145
Tumor
0.4
431
Tumor
0.4
785
Tumor
0.4
171
Tumor
0.4
413
Tumor
0.3
665
Tumor
0.3
196
Normal
0.3
331
Tumor
0.3
357
Tumor
0.3
491
Tumor
0.3
311
Tumor
0.3
983
Tumor
0.3
132
Normal
0.3
141
Tumor
0.3
443
Tumor
0.3
187
Tumor
0.2
1031
Tumor
0.2
222
Normal
0.2
865
Tumor
0.2
195
Tumor
0.2
851
Tumor
0.2
1013
Tumor
0.2
517
Tumor
0.2
813
Tumor
0.2
131
Tumor
0.2
231
Tumor
0.2
777
Tumor
0.2
455
Tumor
0.2
278
Normal
0.2
395
Tumor
0.2
192
Normal
0.2
545
Tumor
0.2
755
Tumor
0.2
467
Tumor
0.2
571
Tumor
0.2
136
Normal
0.2
814
Normal
0.2
615
Tumor
0.2
815
Tumor
0.2
427
Tumor
0.2
211
Tumor
0.2
355
Tumor
0.2
563
Tumor
0.2
277
Tumor
0.2
1025
Tumor
0.2
527
Tumor
0.2
298
Normal
0.1
218
Normal
0.1
361
Tumor
0.1
435
Tumor
0.1
113
Tumor
0.1
257
Tumor
0.1
221
Tumor
0.1
434
Normal
0.1
487
Tumor
0.1
367
Tumor
0.1
473
Tumor
0.1
535
Tumor
0.1
446
Normal
0.1
477
Tumor
0.1
138
Normal
0.1
432
Normal
0.1
873
Tumor
0.1
863
Tumor
0.1
161
Tumor
0.1
314
Normal
0.1
525
Tumor
0.1
343
Tumor
0.1
393
Tumor
0.1
953
Tumor
0.1
883
Tumor
0.1
341
Tumor
0.1
214
Normal
0.1
465
Tumor
0.1
1015
Tumor
0.1
672
Normal
0.1
423
Tumor
0.1
466
Normal
0.1
698
Normal
0.1
572
Normal
0.0
332
Normal
0.0
557
Tumor
0.0
741
Tumor
0.0
956
Normal
0.0
232
Normal
0.0
671
Tumor
0.0
493
Tumor
0.0
743
Tumor
0.0
867
Tumor
0.0
664
Normal
0.0
312
Normal
0.0
648
Normal
0.0
267
Tumor
0.0
146
Normal
0.0
463
Tumor
0.0
558
Normal
0.0
383
Tumor
0.0
564
Normal
0.0
436
Normal
0.0
375
Tumor
0.0
142
Normal
0.0
877
Tumor
0.0
185
Tumor
0.0
967
Tumor
0.0
553
Tumor
0.0
488
Normal
-0.1
862
Normal
-0.1
464
Normal
-0.1
523
Tumor
-0.1
271
Tumor
-0.1
568
Normal
-0.1
386
Normal
-0.1
456
Normal
-0.1
662
Normal
-0.1
524
Normal
-0.1
536
Normal
-0.1
663
Tumor
-0.1
955
Tumor
-0.1
498
Normal
-0.1
471
Tumor
-0.1
125
Tumor
-0.1
388
Normal
-0.1
1043
Tumor
-0.1
724
Normal
-0.1
327
Tumor
-0.1
952
Normal
-0.1
823
Tumor
-0.1
396
Normal
-0.1
574
Normal
-0.1
428
Normal
-0.1
666
Normal
-0.1
394
Normal
-0.1
128
Normal
-0.1
975
Tumor
-0.1
444
Normal
-0.1
223
Tumor
-0.1
268
Normal
-0.1
721
Tumor
-0.2
186
Normal
-0.2
925
Tumor
-0.2
426
Normal
-0.2
283
Tumor
-0.2
342
Normal
-0.2
392
Normal
-0.2
147
Tumor
-0.2
857
Tumor
-0.2
881
Tumor
-0.2
484
Normal
-0.2
1028
Normal
-0.2
963
Tumor
-0.2
817
Tumor
-0.2
943
Tumor
-0.2
272
Normal
-0.2
1022
Normal
-0.2
424
Normal
-0.2
452
Normal
-0.2
533
Tumor
-0.2
746
Normal
-0.2
1046
Normal
-0.2
513
Tumor
-0.2
258
Normal
-0.2
451
Tumor
-0.2
468
Normal
-0.2
938
Normal
-0.2
816
Normal
-0.2
366
Normal
-0.2
262
Normal
-0.2
447
Tumor
-0.2
368
Normal
-0.2
937
Tumor
-0.2
728
Normal
-0.2
172
Normal
-0.2
492
Normal
-0.2
365
Tumor
-0.2
126
Normal
-0.2
567
Tumor
-0.2
478
Normal
-0.2
737
Tumor
-0.2
954
Normal
-0.3
966
Normal
-0.3
114
Normal
-0.3
285
Tumor
-0.3
818
Normal
-0.3
744
Normal
-0.3
494
Normal
-0.3
981
Tumor
-0.3
1032
Normal
-0.3
344
Normal
-0.3
944
Normal
-0.3
864
Normal
-0.3
917
Tumor
-0.3
448
Normal
-0.3
112
Tumor
-0.3
188
Normal
-0.3
415
Tumor
-0.3
723
Tumor
-0.3
515
Tumor
-0.3
363
Tumor
-0.3
353
Tumor
-0.3
1044
Normal
-0.3
866
Normal
-0.3
124
Normal
-0.3
858
Normal
-0.3
384
Normal
-0.3
617
Tumor
-0.3
618
Normal
-0.3
1016
Normal
-0.3
616
Normal
-0.3
1026
Normal
-0.3
976
Normal
-0.3
148
Normal
-0.3
376
Normal
-0.3
738
Normal
-0.3
422
Normal
-0.3
641
Tumor
-0.3
964
Normal
-0.3
824
Normal
-0.3
516
Normal
-0.3
162
Normal
-0.3
352
Normal
-0.3
984
Normal
-0.3
538
Normal
-0.4
913
Tumor
-0.4
716
Normal
-0.4
874
Normal
-0.4
715
Tumor
-0.4
968
Normal
-0.4
526
Normal
-0.4
868
Normal
-0.4
514
Normal
-0.4
518
Normal
-0.4
722
Normal
-0.4
111
Normal
-0.4
1014
Normal
-0.4
227
Tumor
-0.4
362
Normal
-0.4
978
Normal
-0.4
697
Tumor
-0.4
915
Tumor
-0.4
727
Tumor
-0.4
778
Normal
-0.4
714
Normal
-0.4
528
Normal
-0.4
745
Tumor
-0.4
713
Tumor
-0.4
354
Normal
-0.4
421
Tumor
-0.4
627
Tumor
-0.4
636
Normal
-0.4
852
Normal
-0.4
554
Normal
-0.4
921
Tumor
-0.5
958
Normal
-0.5
642
Normal
-0.5
461
Tumor
-0.5
696
Normal
-0.5
756
Normal
-0.5
534
Normal
-0.5
686
Normal
-0.5
786
Normal
-0.5
414
Normal
-0.5
628
Normal
-0.5
546
Normal
-0.5
742
Normal
-0.5
284
Normal
-0.5
982
Normal
-0.5
923
Tumor
-0.5
416
Normal
-0.6
364
Normal
-0.6
1045
Tumor
-0.6
228
Normal
-0.6
412
Normal
-0.6
328
Normal
-0.6
1042
Normal
-0.6
695
Tumor
-0.6
356
Normal
-0.6
914
Normal
-0.6
482
Normal
-0.6
358
Normal
-0.7
472
Normal
-0.7
224
Normal
-0.7
212
Normal
-0.7
474
Normal
-0.8
912
Normal
-0.8
878
Normal
-0.8
922
Normal
-0.8
918
Normal
-0.9
286
Normal
-0.9
926
Normal
-0.9
882
Normal
-0.9
924
Normal
-1.0
916
Normal
-1.0
462
Normal
-1.0
884
Normal
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
