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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
142.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
134.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
91.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
77.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
62.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
62.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
60.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
59.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
59.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
57.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
57.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
43.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
22.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NCK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
58.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
51.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
49.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
42.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
36.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
32.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
23.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.2
545
Tumor
1.0
192
Normal
1.0
537
Tumor
0.8
297
Tumor
0.8
478
Normal
0.8
131
Tumor
0.7
695
Tumor
0.7
498
Normal
0.6
257
Tumor
0.6
487
Tumor
0.6
492
Normal
0.6
455
Tumor
0.5
917
Tumor
0.5
943
Tumor
0.5
427
Tumor
0.5
916
Normal
0.5
141
Tumor
0.5
425
Tumor
0.5
283
Tumor
0.5
536
Normal
0.5
415
Tumor
0.4
126
Normal
0.4
921
Tumor
0.4
852
Normal
0.4
361
Tumor
0.4
923
Tumor
0.4
925
Tumor
0.4
538
Normal
0.4
343
Tumor
0.4
268
Normal
0.4
563
Tumor
0.4
965
Tumor
0.4
386
Normal
0.4
641
Tumor
0.4
881
Tumor
0.4
727
Tumor
0.4
211
Tumor
0.4
311
Tumor
0.4
924
Normal
0.4
553
Tumor
0.3
647
Tumor
0.3
672
Normal
0.3
976
Normal
0.3
375
Tumor
0.3
524
Normal
0.3
285
Tumor
0.3
817
Tumor
0.3
224
Normal
0.3
271
Tumor
0.3
363
Tumor
0.3
277
Tumor
0.3
535
Tumor
0.3
737
Tumor
0.3
874
Normal
0.3
975
Tumor
0.3
523
Tumor
0.3
185
Tumor
0.3
816
Normal
0.3
124
Normal
0.3
188
Normal
0.3
1031
Tumor
0.3
447
Tumor
0.3
344
Normal
0.3
384
Normal
0.3
558
Normal
0.3
671
Tumor
0.3
471
Tumor
0.3
745
Tumor
0.3
572
Normal
0.3
958
Normal
0.3
212
Normal
0.2
434
Normal
0.2
127
Tumor
0.2
146
Normal
0.2
823
Tumor
0.2
785
Tumor
0.2
331
Tumor
0.2
968
Normal
0.2
232
Normal
0.2
114
Normal
0.2
355
Tumor
0.2
567
Tumor
0.2
284
Normal
0.2
516
Normal
0.2
574
Normal
0.2
313
Tumor
0.2
666
Normal
0.2
491
Tumor
0.2
984
Normal
0.2
113
Tumor
0.2
517
Tumor
0.2
364
Normal
0.2
744
Normal
0.2
878
Normal
0.2
367
Tumor
0.2
312
Normal
0.2
664
Normal
0.2
138
Normal
0.2
461
Tumor
0.2
223
Tumor
0.2
135
Tumor
0.2
778
Normal
0.1
161
Tumor
0.1
444
Normal
0.1
412
Normal
0.1
662
Normal
0.1
385
Tumor
0.1
952
Normal
0.1
554
Normal
0.1
366
Normal
0.1
966
Normal
0.1
715
Tumor
0.1
755
Tumor
0.1
362
Normal
0.1
884
Normal
0.1
1044
Normal
0.1
483
Tumor
0.1
686
Normal
0.1
954
Normal
0.1
473
Tumor
0.1
716
Normal
0.1
448
Normal
0.1
421
Tumor
0.1
262
Normal
0.1
918
Normal
0.1
132
Normal
0.1
125
Tumor
0.1
352
Normal
0.1
714
Normal
0.1
416
Normal
0.1
728
Normal
0.1
227
Tumor
0.1
546
Normal
0.1
713
Tumor
0.1
214
Normal
0.1
978
Normal
0.1
1028
Normal
0.1
938
Normal
0.1
698
Normal
0.1
814
Normal
0.1
882
Normal
0.1
272
Normal
0.1
376
Normal
0.1
187
Tumor
0.1
617
Tumor
0.0
877
Tumor
0.0
494
Normal
0.0
488
Normal
0.0
786
Normal
0.0
456
Normal
0.0
1042
Normal
0.0
956
Normal
0.0
696
Normal
0.0
147
Tumor
0.0
1045
Tumor
0.0
982
Normal
0.0
137
Tumor
0.0
383
Tumor
0.0
922
Normal
0.0
267
Tumor
0.0
467
Tumor
0.0
642
Normal
0.0
195
Tumor
0.0
463
Tumor
0.0
635
Tumor
0.0
746
Normal
0.0
661
Tumor
0.0
818
Normal
0.0
136
Normal
0.0
474
Normal
0.0
472
Normal
0.0
477
Tumor
0.0
298
Normal
0.0
983
Tumor
0.0
1022
Normal
0.0
396
Normal
0.0
392
Normal
0.0
648
Normal
0.0
395
Tumor
0.0
332
Normal
0.0
944
Normal
0.0
722
Normal
0.0
1043
Tumor
0.0
221
Tumor
0.0
111
Normal
0.0
218
Normal
0.0
387
Tumor
0.0
1046
Normal
0.0
1025
Tumor
0.0
351
Tumor
0.0
357
Tumor
0.0
813
Tumor
0.0
525
Tumor
0.0
957
Tumor
0.0
424
Normal
0.0
368
Normal
0.0
857
Tumor
0.0
142
Normal
0.0
528
Normal
0.0
738
Normal
-0.1
866
Normal
-0.1
217
Tumor
-0.1
721
Tumor
-0.1
213
Tumor
-0.1
864
Normal
-0.1
824
Normal
-0.1
423
Tumor
-0.1
228
Normal
-0.1
571
Tumor
-0.1
534
Normal
-0.1
1014
Normal
-0.1
963
Tumor
-0.1
815
Tumor
-0.1
564
Normal
-0.1
148
Normal
-0.1
723
Tumor
-0.1
628
Normal
-0.1
328
Normal
-0.1
354
Normal
-0.1
128
Normal
-0.1
123
Tumor
-0.1
162
Normal
-0.1
422
Normal
-0.1
1032
Normal
-0.1
171
Tumor
-0.1
172
Normal
-0.1
433
Tumor
-0.1
1016
Normal
-0.1
1021
Tumor
-0.1
756
Normal
-0.1
468
Normal
-0.1
145
Tumor
-0.1
393
Tumor
-0.1
446
Normal
-0.1
278
Normal
-0.1
388
Normal
-0.1
926
Normal
-0.1
482
Normal
-0.1
464
Normal
-0.1
353
Tumor
-0.1
186
Normal
-0.1
697
Tumor
-0.1
777
Tumor
-0.1
462
Normal
-0.1
616
Normal
-0.1
466
Normal
-0.1
484
Normal
-0.1
356
Normal
-0.1
1015
Tumor
-0.1
724
Normal
-0.2
411
Tumor
-0.2
196
Normal
-0.2
981
Tumor
-0.2
365
Tumor
-0.2
428
Normal
-0.2
327
Tumor
-0.2
573
Tumor
-0.2
1026
Normal
-0.2
514
Normal
-0.2
526
Normal
-0.2
913
Tumor
-0.2
914
Normal
-0.2
862
Normal
-0.2
518
Normal
-0.2
883
Tumor
-0.2
493
Tumor
-0.2
627
Tumor
-0.2
742
Normal
-0.2
394
Normal
-0.2
191
Tumor
-0.2
665
Tumor
-0.2
261
Tumor
-0.2
426
Normal
-0.2
868
Normal
-0.2
451
Tumor
-0.2
286
Normal
-0.2
568
Normal
-0.2
953
Tumor
-0.2
258
Normal
-0.2
861
Tumor
-0.2
527
Tumor
-0.2
912
Normal
-0.2
618
Normal
-0.2
414
Normal
-0.3
342
Normal
-0.3
391
Tumor
-0.3
112
Tumor
-0.3
663
Tumor
-0.3
636
Normal
-0.3
915
Tumor
-0.3
967
Tumor
-0.3
222
Normal
-0.3
452
Normal
-0.3
431
Tumor
-0.3
867
Tumor
-0.3
964
Normal
-0.3
436
Normal
-0.3
851
Tumor
-0.3
497
Tumor
-0.3
314
Normal
-0.3
863
Tumor
-0.4
615
Tumor
-0.4
413
Tumor
-0.4
341
Tumor
-0.4
858
Normal
-0.4
443
Tumor
-0.4
1027
Tumor
-0.4
937
Tumor
-0.4
445
Tumor
-0.4
951
Tumor
-0.5
432
Normal
-0.5
513
Tumor
-0.5
481
Tumor
-0.5
515
Tumor
-0.5
533
Tumor
-0.5
955
Tumor
-0.5
231
Tumor
-0.5
741
Tumor
-0.5
557
Tumor
-0.5
435
Tumor
-0.6
465
Tumor
-0.6
1013
Tumor
-0.6
977
Tumor
-0.6
1041
Tumor
-0.6
911
Tumor
-0.7
358
Normal
-0.7
873
Tumor
-0.7
865
Tumor
-0.9
685
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
