MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:42.7 nTPM
GTEx:24.5 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:7.3 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 42.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.0
2586 Male, age 75, left hemisphere 64.9
1827 Male, age 72, unknown 42.5
2828 Female, age 72, unknown 39.7
2666 Male, age 74, left hemisphere 35.5
2219 Male, age 76, both hemispheres 35.3
1833 Male, age 53, unknown 33.1
1830 Male, age 51, unknown 29.5
1870 Female, age 42, unknown 27.9
2019 Male, age 18, unknown 26.6
2411 Female, age 72, unknown 25.4
Dorsal raphe nucleus
nTPM: 34.0
1828 Male, age 53, unknown 36.9
2750 Male, age 76, both hemispheres 36.8
2047 Male, age 72, unknown 32.2
2016 Female, age 72, unknown 32.0
2298 Female, age 72, unknown 31.9
Inferior colliculus
nTPM: 34.3
1890 Male, age 53, unknown 37.1
2097 Female, age 72, unknown 33.8
1848 Female, age 42, unknown 33.6
2849 Male, age 72, unknown 32.7
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Periaquaductal grey, anterior
nTPM: 42.7
1947 Male, age 18, unknown 43.8
1795 Male, age 51, unknown 43.1
2502 Female, age 75, unknown 41.3
Periaquaductal grey, dorsal
nTPM: 32.7
1831 Male, age 72, unknown 37.9
2464 Female, age 72, unknown 31.5
1840 Male, age 53, unknown 31.4
2850 Male, age 76, both hemispheres 29.9
Periaquaductal grey, lateral
nTPM: 36.6
2053 Male, age 18, unknown 43.6
2140 Male, age 76, both hemispheres 33.7
2272 Male, age 74, both hemispheres 32.7
Pretectal area
nTPM: 38.7
1816 Male, age 51, unknown 64.4
1944 Female, age 72, unknown 55.3
2407 Male, age 75, both hemispheres 53.7
2825 Male, age 18, unknown 36.4
2667 Female, age 75, unknown 34.8
2316 Male, age 76, right hemisphere 33.9
2007 Male, age 72, unknown 32.4
1815 Male, age 53, unknown 31.3
2273 Male, age 74, both hemispheres 30.3
1817 Female, age 42, unknown 28.7
2224 Female, age 72, unknown 24.8
Red nucleus
nTPM: 36.0
2584 Male, age 75, left hemisphere 51.3
2725 Female, age 75, unknown 38.3
2227 Male, age 72, unknown 37.3
1821 Female, age 72, unknown 36.9
2769 Male, age 72, unknown 36.7
1865 Male, age 51, unknown 36.6
1954 Female, age 42, unknown 35.9
1904 Male, age 53, unknown 35.4
2503 Female, age 72, unknown 33.8
2588 Male, age 74, left hemisphere 33.4
2823 Male, age 76, right hemisphere 28.1
2785 Male, age 18, unknown 27.8
Substantia nigra
nTPM: 40.1
2665 Male, age 74, both hemispheres 54.9
2583 Male, age 75, right hemisphere 54.3
1916 Female, age 42, unknown 43.7
2590 Female, age 75, unknown 39.9
2699 Male, age 18, unknown 37.8
1851 Male, age 51, unknown 37.5
1941 Male, age 53, unknown 37.1
2241 Male, age 72, unknown 35.8
2409 Female, age 72, unknown 30.5
1889 Female, age 72, unknown 29.7
Superior colliculus
nTPM: 39.3
2261 Male, age 18, unknown 54.9
2087 Female, age 72, unknown 48.7
2664 Male, age 75, both hemispheres 47.7
1796 Male, age 53, unknown 41.1
2668 Female, age 75, unknown 38.8
1913 Female, age 42, unknown 37.8
1995 Male, age 72, unknown 34.6
2587 Male, age 74, left hemisphere 33.3
1895 Male, age 76, right hemisphere 28.3
1839 Male, age 51, unknown 28.0
Ventral tegmental area
nTPM: 32.5
2021 Male, age 53, unknown 35.3
1915 Female, age 42, unknown 34.7
2218 Male, age 76, both hemispheres 32.3
2410 Female, age 72, unknown 31.6
2223 Female, age 72, unknown 31.1
1942 Male, age 51, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.5
Samples: 139

Max nTPM: 51.5
Min nTPM: 11.6
Std nTPM: 7.0
Median nTPM: 23.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 51.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 51.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 45.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 40.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 40.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 39.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 37.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 36.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 36.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 35.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 22.9
Min nTPM: 20.9
Sample A Female 21.9
Sample B Female 21.3
Sample C Male 20.9
Sample D Male 22.9
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 25.2
Min nTPM: 16.4
Sample A Female 25.2
Sample B Female 18.1
Sample C Male 24.9
Sample D Male 16.4
Periaqueductal gray
nTPM: 14.8
Samples: 3

Max nTPM: 15.9
Min nTPM: 13.7
Sample B Female 14.8
Sample C Male 15.9
Sample D Male 13.7
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 20.2
Sample A Female 21.2
Sample B Female 20.2
Sample C Male 22.0
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.3
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.3
Sample A Male 7.8
Sample B Male 8.3
Sample C Female 6.3
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68301634 Antisense, RP_041130_01_E10, Mouse strain C57BL/6J (56 days, male) 0.6

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