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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
103.2
nTPM
HPA Brain:
110.6
nTPM
GTEx:
103.2
nTPM
FANTOM5:
127.9
Scaled Tags Per Million
Pig:
273.8
nTPM
Mouse:
420.5
nTPM
Allen mouse:
6.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
110.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 92.5
2411
Female, age 72, unknown
109.7
1827
Male, age 72, unknown
105.0
2219
Male, age 76, both hemispheres
98.1
2019
Male, age 18, unknown
92.3
1870
Female, age 42, unknown
91.0
2666
Male, age 74, left hemisphere
91.0
1833
Male, age 53, unknown
89.2
2828
Female, age 72, unknown
87.4
1830
Male, age 51, unknown
87.2
2586
Male, age 75, left hemisphere
74.2
Dorsal raphe nucleus nTPM: 96.2
2750
Male, age 76, both hemispheres
107.3
2298
Female, age 72, unknown
105.1
2047
Male, age 72, unknown
99.4
2016
Female, age 72, unknown
85.5
1828
Male, age 53, unknown
83.8
Inferior colliculus nTPM: 84.8
2097
Female, age 72, unknown
98.9
1890
Male, age 53, unknown
88.1
1848
Female, age 42, unknown
76.6
2849
Male, age 72, unknown
75.6
Median raphe nucleus nTPM: 110.6
2220
Male, age 76, midline
110.6
Periaquaductal grey, anterior nTPM: 100.9
1947
Male, age 18, unknown
106.2
2502
Female, age 75, unknown
99.4
1795
Male, age 51, unknown
97.1
Periaquaductal grey, dorsal nTPM: 87.0
1831
Male, age 72, unknown
96.7
2850
Male, age 76, both hemispheres
87.0
2464
Female, age 72, unknown
85.4
1840
Male, age 53, unknown
78.9
Periaquaductal grey, lateral nTPM: 94.3
2272
Male, age 74, both hemispheres
98.5
2053
Male, age 18, unknown
98.4
2140
Male, age 76, both hemispheres
85.8
Pretectal area nTPM: 103.6
1816
Male, age 51, unknown
123.1
1944
Female, age 72, unknown
113.2
1817
Female, age 42, unknown
109.8
1815
Male, age 53, unknown
106.5
2007
Male, age 72, unknown
104.6
2667
Female, age 75, unknown
101.2
2224
Female, age 72, unknown
98.6
2316
Male, age 76, right hemisphere
98.2
2273
Male, age 74, both hemispheres
97.4
2825
Male, age 18, unknown
95.6
2407
Male, age 75, both hemispheres
91.1
Red nucleus nTPM: 87.2
2823
Male, age 76, right hemisphere
97.9
1904
Male, age 53, unknown
96.4
1821
Female, age 72, unknown
95.2
2725
Female, age 75, unknown
89.1
1954
Female, age 42, unknown
87.4
2584
Male, age 75, left hemisphere
86.4
2785
Male, age 18, unknown
85.2
1865
Male, age 51, unknown
84.5
2588
Male, age 74, left hemisphere
83.9
2503
Female, age 72, unknown
83.3
2227
Male, age 72, unknown
79.5
2769
Male, age 72, unknown
78.2
Substantia nigra nTPM: 102.3
2409
Female, age 72, unknown
129.9
2241
Male, age 72, unknown
117.1
1916
Female, age 42, unknown
109.1
1941
Male, age 53, unknown
108.7
1889
Female, age 72, unknown
101.6
1851
Male, age 51, unknown
98.9
2590
Female, age 75, unknown
98.5
2665
Male, age 74, both hemispheres
87.2
2583
Male, age 75, right hemisphere
86.8
2699
Male, age 18, unknown
85.2
Superior colliculus nTPM: 94.7
2261
Male, age 18, unknown
112.0
2087
Female, age 72, unknown
103.9
2668
Female, age 75, unknown
98.2
2587
Male, age 74, left hemisphere
97.9
1895
Male, age 76, right hemisphere
94.8
1796
Male, age 53, unknown
93.6
1839
Male, age 51, unknown
92.3
1913
Female, age 42, unknown
88.9
1995
Male, age 72, unknown
82.9
2664
Male, age 75, both hemispheres
82.3
Ventral tegmental area nTPM: 101.1
2218
Male, age 76, both hemispheres
109.2
2410
Female, age 72, unknown
106.9
2021
Male, age 53, unknown
102.8
1942
Male, age 51, unknown
100.0
1915
Female, age 42, unknown
96.4
2223
Female, age 72, unknown
91.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 103.2
Samples: 139
Max nTPM: 183.2
Min nTPM: 56.9
Std nTPM: 23.6
Median nTPM: 99.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
183.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
182.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
177.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
163.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
157.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
156.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
154.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
148.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
140.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
135.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
132.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
132.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
131.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
130.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
129.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
129.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
128.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
126.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
125.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
124.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
123.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
123.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
123.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
122.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
122.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
122.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
121.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
121.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
120.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
120.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
119.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
119.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
119.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
118.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
118.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
117.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
117.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
117.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
117.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
115.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
114.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
113.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
113.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
112.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
110.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
110.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
110.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
109.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
108.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
108.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
108.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
106.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
106.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
106.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
105.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
104.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
104.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
103.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
102.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
102.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
102.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
101.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
101.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
101.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
100.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
99.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
99.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
99.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
99.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
99.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
99.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
98.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
98.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
98.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
98.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
97.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
97.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
97.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
97.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
96.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
95.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
95.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
95.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
95.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
95.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
95.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
94.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
94.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
93.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
93.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
93.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
92.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
92.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
91.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
91.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
91.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
91.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
90.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
90.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
89.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
89.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
88.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
87.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
87.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
87.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
86.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
86.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
85.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
85.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
84.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
84.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
84.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
82.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
82.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
81.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
81.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
81.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
81.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
80.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
80.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
80.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
80.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
79.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
78.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
78.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
77.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
76.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
75.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
72.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
71.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
71.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
69.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
68.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
67.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
65.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
65.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
64.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
63.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
56.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
420.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 420.5
Samples: 4
Max nTPM: 427.9
Min nTPM: 415.0
Sample A
Male
418.0
Sample B
Male
421.2
Sample C
Female
415.0
Sample D
Female
427.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.