We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
92.6
nTPM
HPA Brain:
109.8
nTPM
GTEx:
92.6
nTPM
FANTOM5:
162.0
Scaled Tags Per Million
Pig:
188.4
nTPM
Mouse:
466.0
nTPM
Allen mouse:
8.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA069590
Antibody CAB004360
Glial cells
Not detected
Medium
Neuronal cells
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 89.2
1898
Male, age 80, left hemisphere
100.4
1855
Male, age 76, left hemisphere
95.5
2621
Female, age 67, right hemisphere
89.3
1911
Female, age 85, right hemisphere
88.2
2529
Female, age 94, left hemisphere
86.3
2148
Female, age 91, left hemisphere
75.8
Dentate gyrus nTPM: 93.1
2010
Male, age 76, both hemispheres
109.1
1927
Female, age 91, both hemispheres
99.6
2530
Female, age 94, left hemisphere
96.4
2528
Male, age 74, both hemispheres
91.5
2246
Female, age 85, both hemispheres
89.0
2531
Female, age 67, both hemispheres
73.1
Entorhinal gyrus nTPM: 96.3
1938
Female, age 85, left hemisphere
113.7
1787
Male, age 76, left hemisphere
102.7
2764
Male, age 80, right hemisphere
101.1
2613
Female, age 94, left hemisphere
94.6
2117
Female, age 91, right hemisphere
88.5
2686
Male, age 75, right hemisphere
77.4
Hippocampus, CA1 nTPM: 97.0
2749
Male, age 80, left hemisphere
121.4
2045
Male, age 76, both hemispheres
96.5
1873
Female, age 85, both hemispheres
93.7
2527
Male, age 74, both hemispheres
87.2
2082
Female, age 91, right hemisphere
86.3
Hippocampus, CA2 nTPM: 97.6
1892
Male, age 76, both hemispheres
107.9
2249
Male, age 74, both hemispheres
104.8
1940
Female, age 85, left hemisphere
98.6
1963
Male, age 80, left hemisphere
98.1
2113
Female, age 91, right hemisphere
88.2
2437
Female, age 94, left hemisphere
87.8
Hippocampus, CA3 nTPM: 91.6
1867
Male, age 76, both hemispheres
107.7
2137
Male, age 80, left hemisphere
98.9
2436
Male, age 74, both hemispheres
98.8
1891
Female, age 85, both hemispheres
95.1
2620
Female, age 94, left hemisphere
77.4
2861
Female, age 67, both hemispheres
72.1
Parahippocampal cortex nTPM: 99.6
1850
Male, age 80, both hemispheres
114.5
2250
Female, age 67, right hemisphere
110.2
2693
Female, age 94, both hemispheres
108.3
1933
Female, age 85, both hemispheres
106.4
2018
Male, age 76, both hemispheres
103.0
1990
Female, age 91, right hemisphere
100.6
2245
Female, age 91, both hemispheres
95.4
2532
Female, age 72, left hemisphere
94.1
2692
Male, age 74, both hemispheres
87.4
2622
Female, age 67, right hemisphere
76.1
Perirhinal gyrus nTPM: 109.8
1841
Female, age 85, right hemisphere
117.1
1847
Female, age 91, left hemisphere
115.9
2521
Female, age 94, right hemisphere
108.2
1794
Male, age 80, right hemisphere
107.0
2848
Male, age 76, right hemisphere
100.7
Subiculum nTPM: 97.6
1977
Female, age 85, both hemispheres
107.6
2438
Female, age 94, left hemisphere
105.5
2042
Male, age 76, both hemispheres
101.3
1901
Male, age 80, both hemispheres
96.4
2729
Female, age 91, right hemisphere
91.3
2619
Male, age 74, both hemispheres
83.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 92.6
Samples: 197
Max nTPM: 150.3
Min nTPM: 57.3
Std nTPM: 18.3
Median nTPM: 91.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
150.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
149.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
147.3
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
135.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
131.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
131.0
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
129.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
127.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
126.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
124.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
124.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
123.8
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
123.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
122.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
121.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
121.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
120.0
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
119.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
117.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
117.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
115.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
115.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
115.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
115.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
114.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
113.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
112.4
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
111.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
111.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
109.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
109.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
108.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
108.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
108.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
108.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
108.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
107.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
107.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
107.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
107.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
107.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
106.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
106.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
106.2
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
105.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
105.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
105.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
104.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
104.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
103.7
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
103.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
103.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
102.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
102.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
102.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
102.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
101.8
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
101.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
101.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
101.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
101.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
99.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
99.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
99.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
99.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
99.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
99.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
98.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
98.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
98.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
97.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
97.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
97.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
97.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
97.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
97.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
97.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
96.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
96.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
96.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
96.0
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
95.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
95.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
94.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
94.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
94.2
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
93.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
93.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
93.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
93.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
93.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
93.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
92.5
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
92.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
92.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
92.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
91.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
91.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
91.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
91.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
91.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
90.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
90.6
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
90.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
90.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
90.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
90.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
89.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
89.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
89.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
88.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
88.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
88.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
88.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
87.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
86.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
86.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
86.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
85.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
85.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
85.7
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
85.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
85.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
85.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
85.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
85.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
84.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
83.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
83.4
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
83.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
82.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
82.8
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
82.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
82.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
82.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
82.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
81.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
81.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
81.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
81.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
81.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
80.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
80.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
80.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
80.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
80.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
79.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
78.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
78.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
78.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
77.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
77.7
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
77.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
77.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
77.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
76.0
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
75.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
75.8
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
75.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
75.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
75.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
75.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
74.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
74.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
74.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
74.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
73.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
72.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
72.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
72.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
71.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
71.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
71.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
70.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
70.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
70.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
70.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
70.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
69.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
69.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
69.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
68.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
68.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
66.7
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
66.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
65.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
65.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
64.7
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
64.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
64.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
64.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
62.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
61.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
61.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
61.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
59.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
57.3
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
466.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 454.7
Samples: 4
Max nTPM: 473.3
Min nTPM: 423.6
Sample A
Male
423.6
Sample B
Male
456.0
Sample C
Female
465.7
Sample D
Female
473.3
Hippocampal formation nTPM: 466.0
Samples: 4
Max nTPM: 534.4
Min nTPM: 428.5
Sample A
Male
534.4
Sample B
Male
428.5
Sample C
Female
462.9
Sample D
Female
438.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.