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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCOF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
25.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
18.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCOF1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
2.0
473
Tumor
1.6
865
Tumor
1.4
285
Tumor
1.2
951
Tumor
1.2
1013
Tumor
1.1
641
Tumor
1.1
1021
Tumor
1.1
967
Tumor
1.0
685
Tumor
1.0
483
Tumor
1.0
724
Normal
0.9
517
Tumor
0.9
497
Tumor
0.9
665
Tumor
0.9
881
Tumor
0.9
527
Tumor
0.9
817
Tumor
0.8
743
Tumor
0.8
975
Tumor
0.8
351
Tumor
0.8
557
Tumor
0.8
131
Tumor
0.8
123
Tumor
0.8
413
Tumor
0.8
487
Tumor
0.8
977
Tumor
0.8
231
Tumor
0.8
963
Tumor
0.7
363
Tumor
0.7
493
Tumor
0.7
861
Tumor
0.7
545
Tumor
0.7
883
Tumor
0.7
727
Tumor
0.7
223
Tumor
0.7
523
Tumor
0.7
533
Tumor
0.6
715
Tumor
0.6
331
Tumor
0.6
385
Tumor
0.6
537
Tumor
0.6
925
Tumor
0.6
877
Tumor
0.6
387
Tumor
0.6
1031
Tumor
0.6
923
Tumor
0.6
383
Tumor
0.6
211
Tumor
0.6
261
Tumor
0.6
355
Tumor
0.5
635
Tumor
0.5
823
Tumor
0.5
171
Tumor
0.5
535
Tumor
0.5
213
Tumor
0.5
567
Tumor
0.5
375
Tumor
0.5
1041
Tumor
0.5
161
Tumor
0.5
341
Tumor
0.5
937
Tumor
0.5
617
Tumor
0.5
447
Tumor
0.5
983
Tumor
0.4
513
Tumor
0.4
277
Tumor
0.4
911
Tumor
0.4
353
Tumor
0.4
913
Tumor
0.4
221
Tumor
0.4
477
Tumor
0.4
471
Tumor
0.4
433
Tumor
0.4
297
Tumor
0.4
553
Tumor
0.4
267
Tumor
0.4
957
Tumor
0.4
425
Tumor
0.3
525
Tumor
0.3
431
Tumor
0.3
443
Tumor
0.3
737
Tumor
0.3
411
Tumor
0.3
915
Tumor
0.3
283
Tumor
0.3
227
Tumor
0.3
367
Tumor
0.3
921
Tumor
0.3
391
Tumor
0.3
671
Tumor
0.3
415
Tumor
0.3
467
Tumor
0.2
857
Tumor
0.2
435
Tumor
0.2
573
Tumor
0.2
814
Normal
0.2
571
Tumor
0.2
217
Tumor
0.2
395
Tumor
0.2
785
Tumor
0.2
455
Tumor
0.2
492
Normal
0.2
563
Tumor
0.2
135
Tumor
0.2
867
Tumor
0.2
813
Tumor
0.2
127
Tumor
0.2
427
Tumor
0.2
461
Tumor
0.1
498
Normal
0.1
1027
Tumor
0.1
185
Tumor
0.1
311
Tumor
0.1
1025
Tumor
0.1
451
Tumor
0.1
191
Tumor
0.1
187
Tumor
0.1
478
Normal
0.1
491
Tumor
0.1
917
Tumor
0.1
647
Tumor
0.1
524
Normal
0.1
851
Tumor
0.1
313
Tumor
0.1
721
Tumor
0.1
661
Tumor
0.1
536
Normal
0.0
445
Tumor
0.0
257
Tumor
0.0
1043
Tumor
0.0
943
Tumor
0.0
695
Tumor
0.0
538
Normal
0.0
515
Tumor
0.0
981
Tumor
0.0
984
Normal
0.0
815
Tumor
0.0
916
Normal
0.0
954
Normal
0.0
745
Tumor
-0.1
112
Tumor
-0.1
686
Normal
-0.1
953
Tumor
-0.1
852
Normal
-0.1
663
Tumor
-0.1
873
Tumor
-0.1
964
Normal
-0.1
516
Normal
-0.1
423
Tumor
-0.1
976
Normal
-0.1
195
Tumor
-0.1
966
Normal
-0.1
481
Tumor
-0.1
918
Normal
-0.1
697
Tumor
-0.2
741
Tumor
-0.2
922
Normal
-0.2
716
Normal
-0.2
224
Normal
-0.2
1042
Normal
-0.2
866
Normal
-0.2
714
Normal
-0.2
924
Normal
-0.2
958
Normal
-0.2
968
Normal
-0.2
444
Normal
-0.2
744
Normal
-0.2
546
Normal
-0.2
554
Normal
-0.2
488
Normal
-0.2
777
Tumor
-0.2
863
Tumor
-0.2
858
Normal
-0.2
1028
Normal
-0.2
361
Tumor
-0.2
472
Normal
-0.2
147
Tumor
-0.2
192
Normal
-0.2
484
Normal
-0.2
878
Normal
-0.2
874
Normal
-0.2
1032
Normal
-0.2
696
Normal
-0.2
463
Tumor
-0.2
1014
Normal
-0.2
212
Normal
-0.2
141
Tumor
-0.2
113
Tumor
-0.2
474
Normal
-0.2
268
Normal
-0.2
755
Tumor
-0.2
137
Tumor
-0.2
328
Normal
-0.2
494
Normal
-0.2
944
Normal
-0.2
412
Normal
-0.2
824
Normal
-0.2
882
Normal
-0.2
978
Normal
-0.2
818
Normal
-0.2
518
Normal
-0.3
271
Tumor
-0.3
327
Tumor
-0.3
884
Normal
-0.3
672
Normal
-0.3
416
Normal
-0.3
713
Tumor
-0.3
864
Normal
-0.3
364
Normal
-0.3
284
Normal
-0.3
952
Normal
-0.3
528
Normal
-0.3
1045
Tumor
-0.3
534
Normal
-0.3
816
Normal
-0.3
982
Normal
-0.3
938
Normal
-0.3
926
Normal
-0.3
421
Tumor
-0.3
786
Normal
-0.3
384
Normal
-0.3
778
Normal
-0.3
955
Tumor
-0.3
698
Normal
-0.3
868
Normal
-0.3
462
Normal
-0.3
1015
Tumor
-0.3
357
Tumor
-0.3
1016
Normal
-0.3
558
Normal
-0.3
465
Tumor
-0.3
1026
Normal
-0.3
228
Normal
-0.3
1022
Normal
-0.3
434
Normal
-0.3
572
Normal
-0.4
1044
Normal
-0.4
728
Normal
-0.4
514
Normal
-0.4
912
Normal
-0.4
145
Tumor
-0.4
365
Tumor
-0.4
574
Normal
-0.4
356
Normal
-0.4
188
Normal
-0.4
956
Normal
-0.4
756
Normal
-0.4
862
Normal
-0.4
386
Normal
-0.4
662
Normal
-0.4
362
Normal
-0.4
448
Normal
-0.4
628
Normal
-0.4
526
Normal
-0.4
286
Normal
-0.4
722
Normal
-0.4
742
Normal
-0.4
142
Normal
-0.4
738
Normal
-0.4
456
Normal
-0.4
482
Normal
-0.4
352
Normal
-0.4
344
Normal
-0.4
664
Normal
-0.5
393
Tumor
-0.5
615
Tumor
-0.5
312
Normal
-0.5
468
Normal
-0.5
746
Normal
-0.5
396
Normal
-0.5
343
Tumor
-0.5
627
Tumor
-0.5
723
Tumor
-0.5
298
Normal
-0.5
666
Normal
-0.5
1046
Normal
-0.5
914
Normal
-0.5
564
Normal
-0.5
146
Normal
-0.5
642
Normal
-0.5
138
Normal
-0.5
126
Normal
-0.5
148
Normal
-0.5
366
Normal
-0.5
272
Normal
-0.5
446
Normal
-0.5
452
Normal
-0.5
262
Normal
-0.6
568
Normal
-0.6
368
Normal
-0.6
114
Normal
-0.6
278
Normal
-0.6
172
Normal
-0.6
464
Normal
-0.6
636
Normal
-0.6
124
Normal
-0.6
466
Normal
-0.6
232
Normal
-0.6
162
Normal
-0.6
422
Normal
-0.6
424
Normal
-0.6
436
Normal
-0.6
426
Normal
-0.6
376
Normal
-0.6
258
Normal
-0.6
648
Normal
-0.6
136
Normal
-0.6
428
Normal
-0.6
218
Normal
-0.6
392
Normal
-0.7
354
Normal
-0.7
342
Normal
-0.7
132
Normal
-0.7
186
Normal
-0.7
394
Normal
-0.7
214
Normal
-0.7
332
Normal
-0.7
616
Normal
-0.7
618
Normal
-0.7
388
Normal
-0.7
196
Normal
-0.7
222
Normal
-0.7
111
Normal
-0.7
125
Tumor
-0.8
432
Normal
-0.8
128
Normal
-0.8
414
Normal
-0.8
358
Normal
-0.8
314
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
