We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CFAP20 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
46.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
38.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
38.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
37.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
25.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
18.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.1
777
Tumor
1.0
863
Tumor
0.9
527
Tumor
0.9
724
Normal
0.9
951
Tumor
0.8
481
Tumor
0.7
463
Tumor
0.7
391
Tumor
0.7
433
Tumor
0.6
445
Tumor
0.6
513
Tumor
0.6
413
Tumor
0.6
741
Tumor
0.6
387
Tumor
0.6
661
Tumor
0.5
911
Tumor
0.5
627
Tumor
0.5
123
Tumor
0.5
467
Tumor
0.5
977
Tumor
0.5
444
Normal
0.5
493
Tumor
0.5
545
Tumor
0.4
965
Tumor
0.4
432
Normal
0.4
451
Tumor
0.4
865
Tumor
0.4
285
Tumor
0.4
617
Tumor
0.4
112
Tumor
0.4
857
Tumor
0.4
113
Tumor
0.4
456
Normal
0.4
743
Tumor
0.4
277
Tumor
0.4
1015
Tumor
0.4
877
Tumor
0.4
452
Normal
0.4
478
Normal
0.3
271
Tumor
0.3
967
Tumor
0.3
446
Normal
0.3
616
Normal
0.3
533
Tumor
0.3
283
Tumor
0.3
497
Tumor
0.3
981
Tumor
0.3
327
Tumor
0.3
517
Tumor
0.3
425
Tumor
0.3
443
Tumor
0.3
385
Tumor
0.3
685
Tumor
0.3
331
Tumor
0.3
434
Normal
0.3
635
Tumor
0.3
472
Normal
0.3
395
Tumor
0.3
464
Normal
0.3
913
Tumor
0.3
557
Tumor
0.3
573
Tumor
0.3
436
Normal
0.3
745
Tumor
0.3
114
Normal
0.2
365
Tumor
0.2
267
Tumor
0.2
482
Normal
0.2
671
Tumor
0.2
867
Tumor
0.2
386
Normal
0.2
221
Tumor
0.2
721
Tumor
0.2
647
Tumor
0.2
975
Tumor
0.2
813
Tumor
0.2
1045
Tumor
0.2
272
Normal
0.2
955
Tumor
0.2
883
Tumor
0.2
714
Normal
0.2
737
Tumor
0.2
755
Tumor
0.2
261
Tumor
0.2
528
Normal
0.2
211
Tumor
0.2
484
Normal
0.2
881
Tumor
0.2
1031
Tumor
0.2
131
Tumor
0.2
1014
Normal
0.2
963
Tumor
0.2
553
Tumor
0.2
383
Tumor
0.2
785
Tumor
0.2
1032
Normal
0.2
716
Normal
0.2
355
Tumor
0.2
523
Tumor
0.2
415
Tumor
0.2
492
Normal
0.2
393
Tumor
0.2
351
Tumor
0.2
515
Tumor
0.2
697
Tumor
0.2
483
Tumor
0.2
126
Normal
0.1
111
Normal
0.1
187
Tumor
0.1
474
Normal
0.1
873
Tumor
0.1
171
Tumor
0.1
558
Normal
0.1
1027
Tumor
0.1
392
Normal
0.1
814
Normal
0.1
537
Tumor
0.1
396
Normal
0.1
188
Normal
0.1
394
Normal
0.1
628
Normal
0.1
466
Normal
0.1
462
Normal
0.1
538
Normal
0.1
145
Tumor
0.1
943
Tumor
0.1
953
Tumor
0.1
516
Normal
0.1
268
Normal
0.1
435
Tumor
0.1
414
Normal
0.1
278
Normal
0.1
388
Normal
0.1
916
Normal
0.1
424
Normal
0.1
744
Normal
0.1
213
Tumor
0.1
727
Tumor
0.1
618
Normal
0.1
127
Tumor
0.1
642
Normal
0.1
124
Normal
0.1
428
Normal
0.1
952
Normal
0.1
298
Normal
0.1
258
Normal
0.1
572
Normal
0.1
297
Tumor
0.1
563
Tumor
0.1
284
Normal
0.1
455
Tumor
0.1
468
Normal
0.1
514
Normal
0.1
742
Normal
0.1
1013
Tumor
0.1
427
Tumor
0.1
728
Normal
0.1
648
Normal
0.1
536
Normal
0.1
696
Normal
0.1
426
Normal
0.0
666
Normal
0.0
957
Tumor
0.0
978
Normal
0.0
313
Tumor
0.0
924
Normal
0.0
231
Tumor
0.0
958
Normal
0.0
314
Normal
0.0
488
Normal
0.0
162
Normal
0.0
262
Normal
0.0
524
Normal
0.0
192
Normal
0.0
1028
Normal
0.0
664
Normal
0.0
328
Normal
0.0
917
Tumor
0.0
546
Normal
0.0
923
Tumor
0.0
852
Normal
0.0
861
Tumor
0.0
1021
Tumor
0.0
494
Normal
0.0
554
Normal
0.0
191
Tumor
0.0
422
Normal
0.0
738
Normal
0.0
217
Tumor
0.0
195
Tumor
0.0
341
Tumor
0.0
232
Normal
0.0
641
Tumor
0.0
357
Tumor
0.0
431
Tumor
0.0
362
Normal
0.0
332
Normal
0.0
212
Normal
0.0
663
Tumor
0.0
786
Normal
0.0
461
Tumor
0.0
125
Tumor
0.0
778
Normal
0.0
1042
Normal
0.0
172
Normal
0.0
465
Tumor
0.0
964
Normal
0.0
954
Normal
0.0
1026
Normal
0.0
698
Normal
0.0
918
Normal
0.0
185
Tumor
0.0
723
Tumor
0.0
353
Tumor
0.0
491
Tumor
0.0
922
Normal
0.0
968
Normal
0.0
1016
Normal
0.0
878
Normal
0.0
817
Tumor
0.0
477
Tumor
0.0
984
Normal
0.0
526
Normal
0.0
884
Normal
0.0
384
Normal
0.0
944
Normal
0.0
686
Normal
0.0
447
Tumor
0.0
375
Tumor
0.0
473
Tumor
0.0
746
Normal
0.0
1022
Normal
0.0
148
Normal
0.0
937
Tumor
0.0
567
Tumor
-0.1
722
Normal
-0.1
416
Normal
-0.1
882
Normal
-0.1
824
Normal
-0.1
286
Normal
-0.1
535
Tumor
-0.1
976
Normal
-0.1
564
Normal
-0.1
966
Normal
-0.1
136
Normal
-0.1
956
Normal
-0.1
498
Normal
-0.1
938
Normal
-0.1
868
Normal
-0.1
364
Normal
-0.1
312
Normal
-0.1
376
Normal
-0.1
361
Tumor
-0.1
756
Normal
-0.1
713
Tumor
-0.1
1046
Normal
-0.1
662
Normal
-0.1
471
Tumor
-0.1
983
Tumor
-0.1
356
Normal
-0.1
354
Normal
-0.1
858
Normal
-0.1
311
Tumor
-0.1
926
Normal
-0.1
423
Tumor
-0.1
128
Normal
-0.1
525
Tumor
-0.1
518
Normal
-0.1
228
Normal
-0.1
218
Normal
-0.1
665
Tumor
-0.1
874
Normal
-0.1
866
Normal
-0.1
487
Tumor
-0.1
132
Normal
-0.1
534
Normal
-0.1
141
Tumor
-0.1
224
Normal
-0.1
715
Tumor
-0.1
1044
Normal
-0.1
161
Tumor
-0.1
574
Normal
-0.1
222
Normal
-0.1
912
Normal
-0.1
448
Normal
-0.1
672
Normal
-0.1
146
Normal
-0.1
421
Tumor
-0.1
1025
Tumor
-0.1
1041
Tumor
-0.1
864
Normal
-0.1
366
Normal
-0.1
412
Normal
-0.1
367
Tumor
-0.1
344
Normal
-0.1
411
Tumor
-0.2
186
Normal
-0.2
636
Normal
-0.2
352
Normal
-0.2
921
Tumor
-0.2
815
Tumor
-0.2
214
Normal
-0.2
816
Normal
-0.2
196
Normal
-0.2
982
Normal
-0.2
223
Tumor
-0.2
914
Normal
-0.2
343
Tumor
-0.2
818
Normal
-0.2
358
Normal
-0.2
862
Normal
-0.2
851
Tumor
-0.2
571
Tumor
-0.2
257
Tumor
-0.2
915
Tumor
-0.2
823
Tumor
-0.2
1043
Tumor
-0.2
368
Normal
-0.2
568
Normal
-0.2
142
Normal
-0.3
138
Normal
-0.3
925
Tumor
-0.3
342
Normal
-0.3
363
Tumor
-0.3
695
Tumor
-0.4
135
Tumor
-0.4
615
Tumor
-0.4
227
Tumor
-0.4
137
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
