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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WIPI1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
82.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
80.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
70.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
66.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
65.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
64.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
57.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
51.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
49.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
49.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
47.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
41.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
41.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
40.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
38.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
38.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
37.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
36.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
33.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
30.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
21.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WIPI1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO45117
0 years, female, NA, stage:2, dead, 1110 days
56.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
49.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
47.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
42.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
35.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.3
1027
Tumor
1.2
957
Tumor
1.2
125
Tumor
1.0
477
Tumor
1.0
257
Tumor
1.0
283
Tumor
0.9
435
Tumor
0.9
953
Tumor
0.8
433
Tumor
0.8
147
Tumor
0.7
981
Tumor
0.7
573
Tumor
0.7
537
Tumor
0.6
1043
Tumor
0.6
636
Normal
0.6
285
Tumor
0.6
355
Tumor
0.6
137
Tumor
0.5
628
Normal
0.5
227
Tumor
0.5
1013
Tumor
0.5
447
Tumor
0.5
967
Tumor
0.5
616
Normal
0.5
425
Tumor
0.5
218
Normal
0.5
353
Tumor
0.5
868
Normal
0.5
356
Normal
0.4
937
Tumor
0.4
474
Normal
0.4
393
Tumor
0.4
618
Normal
0.4
851
Tumor
0.4
451
Tumor
0.4
642
Normal
0.4
462
Normal
0.4
564
Normal
0.4
727
Tumor
0.4
627
Tumor
0.4
187
Tumor
0.4
327
Tumor
0.4
1042
Normal
0.4
615
Tumor
0.4
1044
Normal
0.3
518
Normal
0.3
965
Tumor
0.3
641
Tumor
0.3
482
Normal
0.3
567
Tumor
0.3
472
Normal
0.3
697
Tumor
0.3
983
Tumor
0.3
487
Tumor
0.3
414
Normal
0.3
448
Normal
0.3
426
Normal
0.3
525
Tumor
0.3
743
Tumor
0.3
568
Normal
0.3
223
Tumor
0.3
416
Normal
0.2
123
Tumor
0.2
1046
Normal
0.2
261
Tumor
0.2
966
Normal
0.2
286
Normal
0.2
926
Normal
0.2
432
Normal
0.2
428
Normal
0.2
361
Tumor
0.2
498
Normal
0.2
964
Normal
0.2
313
Tumor
0.2
217
Tumor
0.2
491
Tumor
0.2
415
Tumor
0.2
976
Normal
0.2
492
Normal
0.2
1026
Normal
0.2
975
Tumor
0.2
222
Normal
0.2
311
Tumor
0.2
647
Tumor
0.2
698
Normal
0.2
424
Normal
0.2
915
Tumor
0.2
527
Tumor
0.2
558
Normal
0.2
126
Normal
0.2
912
Normal
0.2
228
Normal
0.1
211
Tumor
0.1
478
Normal
0.1
686
Normal
0.1
111
Normal
0.1
922
Normal
0.1
878
Normal
0.1
884
Normal
0.1
968
Normal
0.1
268
Normal
0.1
917
Tumor
0.1
328
Normal
0.1
357
Tumor
0.1
434
Normal
0.1
924
Normal
0.1
572
Normal
0.1
882
Normal
0.1
481
Tumor
0.1
958
Normal
0.1
212
Normal
0.1
635
Tumor
0.1
1032
Normal
0.1
455
Tumor
0.1
938
Normal
0.1
1025
Tumor
0.1
445
Tumor
0.1
526
Normal
0.1
696
Normal
0.1
1028
Normal
0.1
362
Normal
0.1
1022
Normal
0.1
714
Normal
0.1
172
Normal
0.1
284
Normal
0.1
852
Normal
0.1
214
Normal
0.1
824
Normal
0.1
258
Normal
0.1
536
Normal
0.1
421
Tumor
0.0
188
Normal
0.0
574
Normal
0.0
956
Normal
0.0
124
Normal
0.0
148
Normal
0.0
171
Tumor
0.0
517
Tumor
0.0
728
Normal
0.0
392
Normal
0.0
523
Tumor
0.0
923
Tumor
0.0
785
Tumor
0.0
916
Normal
0.0
864
Normal
0.0
816
Normal
0.0
162
Normal
0.0
272
Normal
0.0
863
Tumor
0.0
224
Normal
0.0
262
Normal
0.0
411
Tumor
0.0
874
Normal
0.0
943
Tumor
0.0
497
Tumor
0.0
341
Tumor
0.0
456
Normal
0.0
778
Normal
0.0
464
Normal
0.0
145
Tumor
0.0
963
Tumor
0.0
918
Normal
0.0
914
Normal
0.0
818
Normal
0.0
368
Normal
0.0
484
Normal
0.0
724
Normal
0.0
142
Normal
0.0
858
Normal
0.0
446
Normal
0.0
196
Normal
0.0
444
Normal
0.0
524
Normal
0.0
461
Tumor
0.0
877
Tumor
0.0
185
Tumor
0.0
977
Tumor
0.0
494
Normal
0.0
385
Tumor
0.0
742
Normal
0.0
297
Tumor
-0.1
954
Normal
-0.1
138
Normal
-0.1
412
Normal
-0.1
1045
Tumor
-0.1
271
Tumor
-0.1
141
Tumor
-0.1
436
Normal
-0.1
365
Tumor
-0.1
1041
Tumor
-0.1
468
Normal
-0.1
883
Tumor
-0.1
132
Normal
-0.1
952
Normal
-0.1
1021
Tumor
-0.1
488
Normal
-0.1
1015
Tumor
-0.1
232
Normal
-0.1
716
Normal
-0.1
817
Tumor
-0.1
1016
Normal
-0.1
741
Tumor
-0.1
135
Tumor
-0.1
376
Normal
-0.1
364
Normal
-0.1
866
Normal
-0.1
146
Normal
-0.2
394
Normal
-0.2
466
Normal
-0.2
186
Normal
-0.2
195
Tumor
-0.2
396
Normal
-0.2
363
Tumor
-0.2
443
Tumor
-0.2
422
Normal
-0.2
722
Normal
-0.2
331
Tumor
-0.2
982
Normal
-0.2
553
Tumor
-0.2
388
Normal
-0.2
563
Tumor
-0.2
815
Tumor
-0.2
685
Tumor
-0.2
617
Tumor
-0.2
386
Normal
-0.2
473
Tumor
-0.2
192
Normal
-0.2
384
Normal
-0.2
213
Tumor
-0.2
161
Tumor
-0.2
514
Normal
-0.2
383
Tumor
-0.2
351
Tumor
-0.2
873
Tumor
-0.2
463
Tumor
-0.2
881
Tumor
-0.2
114
Normal
-0.2
128
Normal
-0.2
955
Tumor
-0.2
136
Normal
-0.2
978
Normal
-0.2
483
Tumor
-0.2
738
Normal
-0.2
777
Tumor
-0.2
867
Tumor
-0.3
1014
Normal
-0.3
823
Tumor
-0.3
862
Normal
-0.3
366
Normal
-0.3
516
Normal
-0.3
546
Normal
-0.3
352
Normal
-0.3
391
Tumor
-0.3
913
Tumor
-0.3
431
Tumor
-0.3
944
Normal
-0.3
662
Normal
-0.3
312
Normal
-0.3
358
Normal
-0.3
861
Tumor
-0.3
387
Tumor
-0.3
452
Normal
-0.3
332
Normal
-0.3
713
Tumor
-0.3
314
Normal
-0.3
367
Tumor
-0.3
343
Tumor
-0.3
664
Normal
-0.4
127
Tumor
-0.4
857
Tumor
-0.4
467
Tumor
-0.4
723
Tumor
-0.4
665
Tumor
-0.4
231
Tumor
-0.4
984
Normal
-0.4
737
Tumor
-0.4
113
Tumor
-0.4
715
Tumor
-0.4
191
Tumor
-0.4
278
Normal
-0.4
221
Tumor
-0.4
395
Tumor
-0.4
528
Normal
-0.4
1031
Tumor
-0.4
756
Normal
-0.4
545
Tumor
-0.4
535
Tumor
-0.4
672
Normal
-0.4
344
Normal
-0.4
298
Normal
-0.4
648
Normal
-0.5
911
Tumor
-0.5
755
Tumor
-0.5
786
Normal
-0.5
375
Tumor
-0.5
661
Tumor
-0.5
744
Normal
-0.5
267
Tumor
-0.5
666
Normal
-0.5
471
Tumor
-0.5
695
Tumor
-0.5
423
Tumor
-0.5
112
Tumor
-0.6
538
Normal
-0.6
921
Tumor
-0.6
354
Normal
-0.6
814
Normal
-0.6
131
Tumor
-0.6
413
Tumor
-0.6
534
Normal
-0.6
342
Normal
-0.6
571
Tumor
-0.6
515
Tumor
-0.6
865
Tumor
-0.6
554
Normal
-0.6
746
Normal
-0.6
493
Tumor
-0.7
671
Tumor
-0.7
513
Tumor
-0.7
721
Tumor
-0.7
663
Tumor
-0.8
813
Tumor
-0.8
925
Tumor
-0.8
951
Tumor
-0.8
533
Tumor
-0.8
557
Tumor
-0.8
427
Tumor
-0.9
277
Tumor
-0.9
465
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
