We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DGCR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
75.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
74.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
70.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
66.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
65.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
56.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
51.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
50.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
50.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
47.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
46.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
43.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
43.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
43.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
42.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
40.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
34.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
34.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
31.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
30.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
23.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
23.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
23.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
22.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
20.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DGCR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.4
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
111.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
70.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
56.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
55.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
50.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
44.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
43.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
41.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
35.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
35.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
34.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
818
Normal
0.9
232
Normal
0.8
231
Tumor
0.7
824
Normal
0.7
858
Normal
0.4
258
Normal
0.4
268
Normal
0.4
473
Tumor
0.4
272
Normal
0.3
261
Tumor
0.2
851
Tumor
0.2
534
Normal
0.2
262
Normal
0.2
477
Tumor
0.2
528
Normal
0.2
471
Tumor
0.1
852
Normal
0.1
816
Normal
0.1
546
Normal
-0.1
533
Tumor
-0.2
1027
Tumor
-0.2
488
Normal
-0.2
267
Tumor
-0.2
257
Tumor
-0.2
1025
Tumor
-0.2
817
Tumor
-0.2
498
Normal
-0.3
483
Tumor
-0.3
461
Tumor
-0.3
527
Tumor
-0.3
474
Normal
-0.3
481
Tumor
-0.4
1032
Normal
-0.4
1026
Normal
-0.4
271
Tumor
-0.4
484
Normal
-0.4
482
Normal
-0.4
538
Normal
-0.4
1041
Tumor
-0.4
492
Normal
-0.4
472
Normal
-0.4
494
Normal
-0.5
493
Tumor
-0.5
487
Tumor
-0.5
554
Normal
-0.5
497
Tumor
-0.6
462
Normal
-0.6
545
Tumor
-0.6
553
Tumor
-0.6
491
Tumor
-0.6
1031
Tumor
-0.6
478
Normal
-0.7
1022
Normal
-0.7
1042
Normal
-0.7
537
Tumor
-0.8
1021
Tumor
-0.8
1028
Normal
-0.8
815
Tumor
-1.1
823
Tumor
-1.3
857
Tumor
-1.3
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.