We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC44A1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
47.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
25.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC44A1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
79.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
29.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
0.7
413
Tumor
0.5
366
Normal
0.5
526
Normal
0.5
573
Tumor
0.5
128
Normal
0.5
114
Normal
0.5
723
Tumor
0.4
425
Tumor
0.4
742
Normal
0.4
414
Normal
0.4
777
Tumor
0.4
422
Normal
0.4
218
Normal
0.4
332
Normal
0.4
125
Tumor
0.4
642
Normal
0.4
616
Normal
0.4
392
Normal
0.4
426
Normal
0.4
456
Normal
0.4
914
Normal
0.4
466
Normal
0.4
192
Normal
0.4
917
Tumor
0.4
696
Normal
0.4
432
Normal
0.4
568
Normal
0.4
778
Normal
0.4
468
Normal
0.3
222
Normal
0.3
186
Normal
0.3
161
Tumor
0.3
428
Normal
0.3
728
Normal
0.3
172
Normal
0.3
132
Normal
0.3
424
Normal
0.3
574
Normal
0.3
517
Tumor
0.3
396
Normal
0.3
126
Normal
0.3
628
Normal
0.3
462
Normal
0.3
756
Normal
0.3
738
Normal
0.3
271
Tumor
0.3
816
Normal
0.3
817
Tumor
0.3
388
Normal
0.3
196
Normal
0.3
448
Normal
0.3
298
Normal
0.3
343
Tumor
0.3
344
Normal
0.3
975
Tumor
0.3
564
Normal
0.3
445
Tumor
0.3
944
Normal
0.3
434
Normal
0.3
672
Normal
0.3
362
Normal
0.3
162
Normal
0.3
386
Normal
0.3
394
Normal
0.2
1026
Normal
0.2
124
Normal
0.2
111
Normal
0.2
435
Tumor
0.2
446
Normal
0.2
666
Normal
0.2
686
Normal
0.2
232
Normal
0.2
474
Normal
0.2
376
Normal
0.2
554
Normal
0.2
358
Normal
0.2
342
Normal
0.2
452
Normal
0.2
878
Normal
0.2
312
Normal
0.2
368
Normal
0.2
648
Normal
0.2
484
Normal
0.2
924
Normal
0.2
353
Tumor
0.2
716
Normal
0.2
228
Normal
0.2
697
Tumor
0.2
874
Normal
0.2
278
Normal
0.2
514
Normal
0.2
722
Normal
0.2
518
Normal
0.2
1044
Normal
0.2
1043
Tumor
0.2
714
Normal
0.2
558
Normal
0.2
138
Normal
0.2
516
Normal
0.2
968
Normal
0.2
864
Normal
0.2
497
Tumor
0.2
148
Normal
0.2
481
Tumor
0.2
142
Normal
0.2
188
Normal
0.2
436
Normal
0.2
744
Normal
0.2
214
Normal
0.2
272
Normal
0.2
523
Tumor
0.2
494
Normal
0.2
314
Normal
0.2
572
Normal
0.2
341
Tumor
0.2
911
Tumor
0.2
412
Normal
0.2
262
Normal
0.2
786
Normal
0.2
258
Normal
0.2
954
Normal
0.1
187
Tumor
0.1
384
Normal
0.1
127
Tumor
0.1
354
Normal
0.1
966
Normal
0.1
636
Normal
0.1
746
Normal
0.1
491
Tumor
0.1
912
Normal
0.1
327
Tumor
0.1
284
Normal
0.1
664
Normal
0.1
698
Normal
0.1
212
Normal
0.1
862
Normal
0.1
956
Normal
0.1
224
Normal
0.1
217
Tumor
0.1
227
Tumor
0.1
737
Tumor
0.1
662
Normal
0.1
963
Tumor
0.1
391
Tumor
0.1
1022
Normal
0.1
286
Normal
0.1
352
Normal
0.1
882
Normal
0.1
865
Tumor
0.1
423
Tumor
0.1
444
Normal
0.1
267
Tumor
0.1
1046
Normal
0.1
416
Normal
0.1
618
Normal
0.1
671
Tumor
0.1
976
Normal
0.1
918
Normal
0.1
427
Tumor
0.1
938
Normal
0.1
1014
Normal
0.1
567
Tumor
0.1
277
Tumor
0.1
472
Normal
0.1
538
Normal
0.1
365
Tumor
0.1
615
Tumor
0.1
461
Tumor
0.0
146
Normal
0.0
528
Normal
0.0
223
Tumor
0.0
952
Normal
0.0
221
Tumor
0.0
884
Normal
0.0
824
Normal
0.0
136
Normal
0.0
492
Normal
0.0
482
Normal
0.0
866
Normal
0.0
328
Normal
0.0
533
Tumor
0.0
883
Tumor
0.0
1028
Normal
0.0
982
Normal
0.0
813
Tumor
0.0
487
Tumor
0.0
851
Tumor
0.0
868
Normal
0.0
467
Tumor
0.0
195
Tumor
0.0
112
Tumor
0.0
141
Tumor
0.0
1042
Normal
0.0
356
Normal
0.0
464
Normal
0.0
1025
Tumor
0.0
926
Normal
0.0
534
Normal
0.0
955
Tumor
0.0
411
Tumor
0.0
364
Normal
0.0
211
Tumor
0.0
546
Normal
0.0
478
Normal
-0.1
488
Normal
-0.1
135
Tumor
-0.1
852
Normal
-0.1
977
Tumor
-0.1
967
Tumor
-0.1
922
Normal
-0.1
536
Normal
-0.1
957
Tumor
-0.1
421
Tumor
-0.1
465
Tumor
-0.1
663
Tumor
-0.1
858
Normal
-0.1
695
Tumor
-0.1
745
Tumor
-0.1
433
Tumor
-0.1
755
Tumor
-0.1
1016
Normal
-0.1
964
Normal
-0.1
953
Tumor
-0.1
857
Tumor
-0.1
1032
Normal
-0.1
537
Tumor
-0.1
131
Tumor
-0.1
877
Tumor
-0.1
185
Tumor
-0.1
145
Tumor
-0.2
524
Normal
-0.2
823
Tumor
-0.2
311
Tumor
-0.2
553
Tumor
-0.2
863
Tumor
-0.2
916
Normal
-0.2
978
Normal
-0.2
984
Normal
-0.2
375
Tumor
-0.2
498
Normal
-0.2
983
Tumor
-0.2
113
Tumor
-0.2
385
Tumor
-0.2
1015
Tumor
-0.2
724
Normal
-0.2
818
Normal
-0.2
471
Tumor
-0.2
361
Tumor
-0.2
814
Normal
-0.2
617
Tumor
-0.2
867
Tumor
-0.2
387
Tumor
-0.2
921
Tumor
-0.2
357
Tumor
-0.2
455
Tumor
-0.2
1013
Tumor
-0.3
213
Tumor
-0.3
515
Tumor
-0.3
383
Tumor
-0.3
1031
Tumor
-0.3
283
Tumor
-0.3
965
Tumor
-0.3
268
Normal
-0.3
257
Tumor
-0.3
355
Tumor
-0.3
873
Tumor
-0.3
571
Tumor
-0.3
937
Tumor
-0.3
958
Normal
-0.3
721
Tumor
-0.3
483
Tumor
-0.3
415
Tumor
-0.3
463
Tumor
-0.3
191
Tumor
-0.3
563
Tumor
-0.3
513
Tumor
-0.3
137
Tumor
-0.3
913
Tumor
-0.4
1041
Tumor
-0.4
943
Tumor
-0.4
393
Tumor
-0.4
641
Tumor
-0.4
861
Tumor
-0.4
431
Tumor
-0.4
363
Tumor
-0.4
741
Tumor
-0.4
525
Tumor
-0.4
627
Tumor
-0.4
147
Tumor
-0.4
297
Tumor
-0.4
1045
Tumor
-0.4
545
Tumor
-0.4
1021
Tumor
-0.4
447
Tumor
-0.4
923
Tumor
-0.5
951
Tumor
-0.5
313
Tumor
-0.5
785
Tumor
-0.5
557
Tumor
-0.5
477
Tumor
-0.5
535
Tumor
-0.5
331
Tumor
-0.5
881
Tumor
-0.5
715
Tumor
-0.5
493
Tumor
-0.5
443
Tumor
-0.5
231
Tumor
-0.5
395
Tumor
-0.5
743
Tumor
-0.5
527
Tumor
-0.5
261
Tumor
-0.5
713
Tumor
-0.6
367
Tumor
-0.6
815
Tumor
-0.6
351
Tumor
-0.6
123
Tumor
-0.6
635
Tumor
-0.6
915
Tumor
-0.6
451
Tumor
-0.6
647
Tumor
-0.6
661
Tumor
-0.6
665
Tumor
-0.7
171
Tumor
-0.7
981
Tumor
-0.8
1027
Tumor
-0.9
473
Tumor
-1.0
685
Tumor
-1.0
727
Tumor
-1.0
925
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
