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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDHD5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
63.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
58.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
54.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
49.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
47.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
45.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
41.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
41.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
41.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
39.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
37.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
37.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
36.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
35.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
34.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
33.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
30.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
30.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
30.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
28.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
28.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
28.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
26.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
24.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
24.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
22.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
22.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.5
465
Tumor
1.1
571
Tumor
1.0
443
Tumor
0.7
357
Tumor
0.7
231
Tumor
0.7
341
Tumor
0.7
331
Tumor
0.6
1041
Tumor
0.6
112
Tumor
0.6
128
Normal
0.5
435
Tumor
0.5
113
Tumor
0.5
114
Normal
0.5
361
Tumor
0.5
636
Normal
0.4
786
Normal
0.4
127
Tumor
0.4
354
Normal
0.4
414
Normal
0.4
618
Normal
0.4
423
Tumor
0.4
162
Normal
0.4
483
Tumor
0.4
186
Normal
0.4
267
Tumor
0.4
358
Normal
0.4
124
Normal
0.4
421
Tumor
0.4
132
Normal
0.4
313
Tumor
0.3
911
Tumor
0.3
172
Normal
0.3
426
Normal
0.3
563
Tumor
0.3
424
Normal
0.3
428
Normal
0.3
564
Normal
0.3
452
Normal
0.3
387
Tumor
0.3
746
Normal
0.3
685
Tumor
0.3
721
Tumor
0.3
196
Normal
0.3
567
Tumor
0.3
671
Tumor
0.3
342
Normal
0.3
257
Tumor
0.3
422
Normal
0.3
356
Normal
0.2
135
Tumor
0.2
462
Normal
0.2
445
Tumor
0.2
466
Normal
0.2
185
Tumor
0.2
367
Tumor
0.2
755
Tumor
0.2
926
Normal
0.2
148
Normal
0.2
427
Tumor
0.2
436
Normal
0.2
981
Tumor
0.2
742
Normal
0.2
944
Normal
0.2
912
Normal
0.2
517
Tumor
0.2
873
Tumor
0.2
261
Tumor
0.2
352
Normal
0.2
278
Normal
0.2
413
Tumor
0.2
111
Normal
0.2
488
Normal
0.2
865
Tumor
0.2
924
Normal
0.2
298
Normal
0.2
557
Tumor
0.2
394
Normal
0.2
344
Normal
0.2
824
Normal
0.1
851
Tumor
0.1
222
Normal
0.1
258
Normal
0.1
642
Normal
0.1
664
Normal
0.1
232
Normal
0.1
665
Tumor
0.1
858
Normal
0.1
464
Normal
0.1
376
Normal
0.1
221
Tumor
0.1
187
Tumor
0.1
915
Tumor
0.1
482
Normal
0.1
332
Normal
0.1
534
Normal
0.1
191
Tumor
0.1
393
Tumor
0.1
494
Normal
0.1
815
Tumor
0.1
214
Normal
0.1
525
Tumor
0.1
195
Tumor
0.1
388
Normal
0.1
1027
Tumor
0.1
228
Normal
0.1
314
Normal
0.1
272
Normal
0.1
818
Normal
0.1
351
Tumor
0.1
864
Normal
0.1
145
Tumor
0.1
628
Normal
0.1
446
Normal
0.1
695
Tumor
0.1
1022
Normal
0.1
366
Normal
0.1
716
Normal
0.1
914
Normal
0.1
648
Normal
0.1
126
Normal
0.1
696
Normal
0.1
456
Normal
0.0
484
Normal
0.0
937
Tumor
0.0
513
Tumor
0.0
953
Tumor
0.0
862
Normal
0.0
866
Normal
0.0
868
Normal
0.0
635
Tumor
0.0
662
Normal
0.0
938
Normal
0.0
188
Normal
0.0
137
Tumor
0.0
568
Normal
0.0
212
Normal
0.0
468
Normal
0.0
722
Normal
0.0
362
Normal
0.0
136
Normal
0.0
432
Normal
0.0
365
Tumor
0.0
756
Normal
0.0
1014
Normal
0.0
472
Normal
0.0
738
Normal
0.0
327
Tumor
0.0
223
Tumor
N/A
146
Normal
0.0
147
Tumor
0.0
884
Normal
0.0
572
Normal
0.0
392
Normal
0.0
616
Normal
0.0
395
Tumor
0.0
1032
Normal
0.0
528
Normal
0.0
138
Normal
0.0
262
Normal
0.0
271
Tumor
0.0
546
Normal
0.0
778
Normal
0.0
882
Normal
0.0
663
Tumor
0.0
672
Normal
0.0
1043
Tumor
0.0
125
Tumor
0.0
451
Tumor
0.0
976
Normal
0.0
514
Normal
0.0
526
Normal
0.0
967
Tumor
0.0
745
Tumor
-0.1
312
Normal
-0.1
852
Normal
-0.1
171
Tumor
-0.1
268
Normal
-0.1
1031
Tumor
-0.1
1045
Tumor
-0.1
396
Normal
-0.1
425
Tumor
-0.1
227
Tumor
-0.1
964
Normal
-0.1
416
Normal
-0.1
433
Tumor
-0.1
284
Normal
-0.1
1016
Normal
-0.1
666
Normal
-0.1
286
Normal
-0.1
982
Normal
-0.1
1046
Normal
-0.1
386
Normal
-0.1
412
Normal
-0.1
461
Tumor
-0.1
383
Tumor
-0.1
516
Normal
-0.1
968
Normal
-0.1
867
Tumor
-0.1
391
Tumor
-0.1
954
Normal
-0.1
224
Normal
-0.1
922
Normal
-0.1
444
Normal
-0.1
816
Normal
-0.1
123
Tumor
-0.1
434
Normal
-0.1
297
Tumor
-0.1
874
Normal
-0.1
978
Normal
-0.1
956
Normal
-0.1
1015
Tumor
-0.1
218
Normal
-0.1
918
Normal
-0.1
1021
Tumor
-0.2
477
Tumor
-0.2
217
Tumor
-0.2
142
Normal
-0.2
686
Normal
-0.2
384
Normal
-0.2
192
Normal
-0.2
328
Normal
-0.2
647
Tumor
-0.2
558
Normal
-0.2
715
Tumor
-0.2
878
Normal
-0.2
955
Tumor
-0.2
492
Normal
-0.2
474
Normal
-0.2
958
Normal
-0.2
714
Normal
-0.2
1028
Normal
-0.2
431
Tumor
-0.2
641
Tumor
-0.2
368
Normal
-0.2
518
Normal
-0.2
883
Tumor
-0.2
448
Normal
-0.2
353
Tumor
-0.2
723
Tumor
-0.2
698
Normal
-0.2
478
Normal
-0.2
984
Normal
-0.2
493
Tumor
-0.2
744
Normal
-0.2
385
Tumor
-0.2
573
Tumor
-0.2
951
Tumor
-0.2
574
Normal
-0.3
364
Normal
-0.3
277
Tumor
-0.3
498
Normal
-0.3
627
Tumor
-0.3
213
Tumor
-0.3
481
Tumor
-0.3
1042
Normal
-0.3
728
Normal
-0.3
923
Tumor
-0.3
487
Tumor
-0.3
916
Normal
-0.3
537
Tumor
-0.3
554
Normal
-0.3
411
Tumor
-0.3
913
Tumor
-0.3
524
Normal
-0.3
363
Tumor
-0.3
131
Tumor
-0.3
661
Tumor
-0.4
447
Tumor
-0.4
538
Normal
-0.4
857
Tumor
-0.4
141
Tumor
-0.4
983
Tumor
-0.4
615
Tumor
-0.4
966
Normal
-0.4
727
Tumor
-0.4
1026
Normal
-0.4
533
Tumor
-0.4
497
Tumor
-0.4
527
Tumor
-0.5
975
Tumor
-0.5
473
Tumor
-0.5
471
Tumor
-0.5
823
Tumor
-0.5
515
Tumor
-0.5
463
Tumor
-0.5
713
Tumor
-0.5
455
Tumor
-0.5
957
Tumor
-0.5
952
Normal
-0.5
977
Tumor
-0.5
921
Tumor
-0.5
467
Tumor
-0.5
785
Tumor
-0.5
1044
Normal
-0.5
743
Tumor
-0.5
777
Tumor
-0.6
415
Tumor
-0.6
943
Tumor
-0.6
343
Tumor
-0.6
553
Tumor
-0.6
881
Tumor
-0.6
535
Tumor
-0.6
863
Tumor
-0.6
491
Tumor
-0.6
161
Tumor
-0.6
814
Normal
-0.6
965
Tumor
-0.7
355
Tumor
-0.7
375
Tumor
-0.7
737
Tumor
-0.7
617
Tumor
-0.7
724
Normal
-0.7
523
Tumor
-0.7
1025
Tumor
-0.8
741
Tumor
-0.8
813
Tumor
-0.8
311
Tumor
-0.8
285
Tumor
-0.8
877
Tumor
-0.8
536
Normal
-0.8
283
Tumor
-0.8
917
Tumor
-0.8
697
Tumor
-0.9
817
Tumor
-0.9
545
Tumor
-1.0
963
Tumor
-1.0
861
Tumor
-1.0
1013
Tumor
-1.2
211
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
