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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB27A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
46.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
39.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
39.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
27.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
23.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
11.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB27A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
231
Samples
Sample
Description
TPM
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
0.9
343
Tumor
0.9
435
Tumor
0.8
567
Tumor
0.7
957
Tumor
0.7
523
Tumor
0.7
917
Tumor
0.6
357
Tumor
0.6
921
Tumor
0.6
713
Tumor
0.6
411
Tumor
0.6
313
Tumor
0.6
517
Tumor
0.6
257
Tumor
0.5
421
Tumor
0.5
537
Tumor
0.5
937
Tumor
0.5
467
Tumor
0.5
573
Tumor
0.4
491
Tumor
0.4
953
Tumor
0.4
311
Tumor
0.4
283
Tumor
0.4
425
Tumor
0.4
471
Tumor
0.4
447
Tumor
0.4
877
Tumor
0.4
536
Normal
0.4
635
Tumor
0.4
341
Tumor
0.4
671
Tumor
0.4
553
Tumor
0.4
813
Tumor
0.3
195
Tumor
0.3
944
Normal
0.3
1027
Tumor
0.3
1026
Normal
0.3
745
Tumor
0.3
697
Tumor
0.3
487
Tumor
0.3
524
Normal
0.3
636
Normal
0.3
376
Normal
0.3
563
Tumor
0.3
368
Normal
0.3
571
Tumor
0.3
627
Tumor
0.3
277
Tumor
0.3
271
Tumor
0.3
1016
Normal
0.3
1044
Normal
0.3
1013
Tumor
0.3
488
Normal
0.2
124
Normal
0.2
393
Tumor
0.2
217
Tumor
0.2
443
Tumor
0.2
568
Normal
0.2
672
Normal
0.2
545
Tumor
0.2
737
Tumor
0.2
1043
Tumor
0.2
695
Tumor
0.2
463
Tumor
0.2
526
Normal
0.2
448
Normal
0.2
815
Tumor
0.2
392
Normal
0.2
223
Tumor
0.2
186
Normal
0.2
817
Tumor
0.2
384
Normal
0.2
938
Normal
0.2
686
Normal
0.2
618
Normal
0.2
142
Normal
0.2
211
Tumor
0.2
527
Tumor
0.2
394
Normal
0.2
882
Normal
0.2
218
Normal
0.2
926
Normal
0.2
978
Normal
0.2
497
Tumor
0.2
455
Tumor
0.2
814
Normal
0.2
558
Normal
0.1
916
Normal
0.1
778
Normal
0.1
452
Normal
0.1
358
Normal
0.1
286
Normal
0.1
385
Tumor
0.1
823
Tumor
0.1
135
Tumor
0.1
617
Tumor
0.1
943
Tumor
0.1
816
Normal
0.1
722
Normal
0.1
923
Tumor
0.1
963
Tumor
0.1
1042
Normal
0.1
724
Normal
0.1
1022
Normal
0.1
422
Normal
0.1
852
Normal
0.1
191
Tumor
0.1
528
Normal
0.1
332
Normal
0.1
1045
Tumor
0.1
966
Normal
0.1
696
Normal
0.1
857
Tumor
0.1
518
Normal
0.1
984
Normal
0.1
557
Tumor
0.1
375
Tumor
0.1
925
Tumor
0.1
922
Normal
0.1
477
Tumor
0.1
213
Tumor
0.1
1025
Tumor
0.1
721
Tumor
0.1
858
Normal
0.1
964
Normal
0.1
212
Normal
0.1
327
Tumor
0.1
492
Normal
0.1
478
Normal
0.1
228
Normal
0.1
975
Tumor
0.1
464
Normal
0.1
628
Normal
0.1
861
Tumor
0.1
1028
Normal
0.1
434
Normal
0.1
328
Normal
0.1
723
Tumor
0.1
148
Normal
0.1
851
Tumor
0.1
1031
Tumor
0.1
716
Normal
0.1
468
Normal
0.1
436
Normal
0.1
756
Normal
0.1
111
Normal
0.1
574
Normal
0.1
446
Normal
0.1
952
Normal
0.1
642
Normal
0.0
1014
Normal
0.0
188
Normal
0.0
1046
Normal
0.0
352
Normal
0.0
353
Tumor
0.0
666
Normal
0.0
356
Normal
0.0
354
Normal
0.0
912
Normal
0.0
564
Normal
0.0
172
Normal
0.0
664
Normal
0.0
342
Normal
0.0
494
Normal
0.0
954
Normal
0.0
412
Normal
0.0
445
Tumor
0.0
185
Tumor
0.0
914
Normal
0.0
958
Normal
0.0
572
Normal
0.0
366
Normal
0.0
344
Normal
0.0
482
Normal
0.0
498
Normal
0.0
284
Normal
0.0
873
Tumor
0.0
862
Normal
0.0
546
Normal
0.0
466
Normal
0.0
364
Normal
0.0
222
Normal
0.0
983
Tumor
0.0
224
Normal
0.0
728
Normal
0.0
976
Normal
0.0
818
Normal
0.0
426
Normal
0.0
864
Normal
0.0
388
Normal
0.0
456
Normal
0.0
514
Normal
0.0
755
Tumor
0.0
746
Normal
0.0
982
Normal
0.0
414
Normal
0.0
714
Normal
0.0
1032
Normal
0.0
616
Normal
0.0
262
Normal
0.0
232
Normal
0.0
196
Normal
0.0
481
Tumor
0.0
698
Normal
0.0
461
Tumor
0.0
424
Normal
0.0
472
Normal
0.0
391
Tumor
0.0
866
Normal
0.0
386
Normal
0.0
114
Normal
0.0
538
Normal
0.0
968
Normal
0.0
534
Normal
0.0
662
Normal
0.0
535
Tumor
0.0
383
Tumor
0.0
396
Normal
0.0
192
Normal
0.0
918
Normal
0.0
433
Tumor
0.0
1021
Tumor
0.0
474
Normal
-0.1
147
Tumor
-0.1
881
Tumor
-0.1
444
Normal
-0.1
956
Normal
-0.1
278
Normal
-0.1
554
Normal
-0.1
432
Normal
-0.1
648
Normal
-0.1
162
Normal
-0.1
786
Normal
-0.1
138
Normal
-0.1
744
Normal
-0.1
727
Tumor
-0.1
395
Tumor
-0.1
738
Normal
-0.1
126
Normal
-0.1
868
Normal
-0.1
272
Normal
-0.1
493
Tumor
-0.1
362
Normal
-0.1
824
Normal
-0.1
136
Normal
-0.1
884
Normal
-0.1
1015
Tumor
-0.1
416
Normal
-0.1
785
Tumor
-0.1
525
Tumor
-0.1
187
Tumor
-0.1
298
Normal
-0.1
141
Tumor
-0.1
878
Normal
-0.1
113
Tumor
-0.1
268
Normal
-0.1
161
Tumor
-0.1
874
Normal
-0.1
685
Tumor
-0.1
314
Normal
-0.1
924
Normal
-0.1
132
Normal
-0.1
297
Tumor
-0.1
533
Tumor
-0.1
146
Normal
-0.1
462
Normal
-0.1
221
Tumor
-0.1
428
Normal
-0.2
214
Normal
-0.2
145
Tumor
-0.2
742
Normal
-0.2
312
Normal
-0.2
331
Tumor
-0.2
131
Tumor
-0.2
661
Tumor
-0.2
867
Tumor
-0.2
355
Tumor
-0.2
285
Tumor
-0.2
981
Tumor
-0.2
451
Tumor
-0.2
387
Tumor
-0.2
615
Tumor
-0.2
641
Tumor
-0.2
516
Normal
-0.2
365
Tumor
-0.2
955
Tumor
-0.2
258
Normal
-0.2
465
Tumor
-0.2
663
Tumor
-0.2
863
Tumor
-0.2
647
Tumor
-0.2
128
Normal
-0.3
431
Tumor
-0.3
977
Tumor
-0.3
484
Normal
-0.3
415
Tumor
-0.3
267
Tumor
-0.3
127
Tumor
-0.3
361
Tumor
-0.3
483
Tumor
-0.4
913
Tumor
-0.4
423
Tumor
-0.4
227
Tumor
-0.4
413
Tumor
-0.4
515
Tumor
-0.4
513
Tumor
-0.4
883
Tumor
-0.4
137
Tumor
-0.4
967
Tumor
-0.4
915
Tumor
-0.5
351
Tumor
-0.5
427
Tumor
-0.5
777
Tumor
-0.5
367
Tumor
-0.5
741
Tumor
-0.5
715
Tumor
-0.5
665
Tumor
-0.5
1041
Tumor
-0.5
865
Tumor
-0.6
951
Tumor
-0.6
112
Tumor
-0.6
171
Tumor
-0.6
363
Tumor
-0.7
231
Tumor
-0.7
123
Tumor
-0.7
261
Tumor
-0.8
473
Tumor
-0.8
965
Tumor
-0.8
911
Tumor
-0.9
743
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
