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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEDD4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEDD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45137
0 years, male, NA, stage:1, alive, 1320 days
55.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
38.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.2
563
Tumor
1.1
925
Tumor
1.0
471
Tumor
1.0
477
Tumor
1.0
431
Tumor
1.0
455
Tumor
1.0
445
Tumor
1.0
921
Tumor
1.0
617
Tumor
0.9
851
Tumor
0.8
815
Tumor
0.7
127
Tumor
0.7
553
Tumor
0.7
297
Tumor
0.6
615
Tumor
0.6
421
Tumor
0.6
271
Tumor
0.6
741
Tumor
0.6
715
Tumor
0.6
123
Tumor
0.6
1021
Tumor
0.6
665
Tumor
0.6
1043
Tumor
0.6
411
Tumor
0.5
983
Tumor
0.5
785
Tumor
0.5
451
Tumor
0.5
443
Tumor
0.5
231
Tumor
0.5
981
Tumor
0.5
881
Tumor
0.5
461
Tumor
0.5
523
Tumor
0.5
137
Tumor
0.5
533
Tumor
0.5
911
Tumor
0.5
953
Tumor
0.4
285
Tumor
0.4
635
Tumor
0.4
977
Tumor
0.4
465
Tumor
0.4
435
Tumor
0.4
915
Tumor
0.4
535
Tumor
0.4
867
Tumor
0.4
1013
Tumor
0.4
387
Tumor
0.4
447
Tumor
0.4
425
Tumor
0.4
937
Tumor
0.4
951
Tumor
0.4
1027
Tumor
0.3
391
Tumor
0.3
1025
Tumor
0.3
1041
Tumor
0.3
351
Tumor
0.3
494
Normal
0.3
861
Tumor
0.3
415
Tumor
0.3
527
Tumor
0.3
135
Tumor
0.3
128
Normal
0.3
187
Tumor
0.3
873
Tumor
0.3
357
Tumor
0.3
191
Tumor
0.3
916
Normal
0.3
367
Tumor
0.2
1031
Tumor
0.2
957
Tumor
0.2
537
Tumor
0.2
517
Tumor
0.2
852
Normal
0.2
823
Tumor
0.2
126
Normal
0.2
483
Tumor
0.2
467
Tumor
0.2
481
Tumor
0.2
278
Normal
0.2
713
Tumor
0.2
1045
Tumor
0.2
641
Tumor
0.2
195
Tumor
0.2
113
Tumor
0.2
171
Tumor
0.2
923
Tumor
0.2
546
Normal
0.2
188
Normal
0.2
728
Normal
0.2
223
Tumor
0.2
616
Normal
0.1
755
Tumor
0.1
361
Tumor
0.1
221
Tumor
0.1
722
Normal
0.1
114
Normal
0.1
327
Tumor
0.1
864
Normal
0.1
112
Tumor
0.1
538
Normal
0.1
478
Normal
0.1
975
Tumor
0.1
257
Tumor
0.1
124
Normal
0.1
536
Normal
0.1
328
Normal
0.1
341
Tumor
0.1
738
Normal
0.1
448
Normal
0.1
685
Tumor
0.1
813
Tumor
0.1
268
Normal
0.1
474
Normal
0.1
192
Normal
0.1
956
Normal
0.1
874
Normal
0.1
493
Tumor
0.1
355
Tumor
0.1
473
Tumor
0.1
353
Tumor
0.1
564
Normal
0.1
857
Tumor
0.1
918
Normal
0.1
958
Normal
0.1
965
Tumor
0.1
354
Normal
0.1
534
Normal
0.1
424
Normal
0.1
558
Normal
0.1
388
Normal
0.0
416
Normal
0.0
472
Normal
0.0
312
Normal
0.0
366
Normal
0.0
413
Tumor
0.0
924
Normal
0.0
358
Normal
0.0
138
Normal
0.0
468
Normal
0.0
422
Normal
0.0
343
Tumor
0.0
976
Normal
0.0
362
Normal
0.0
746
Normal
0.0
111
Normal
0.0
214
Normal
0.0
386
Normal
0.0
647
Tumor
0.0
868
Normal
0.0
955
Tumor
0.0
745
Tumor
0.0
136
Normal
0.0
968
Normal
0.0
284
Normal
0.0
1042
Normal
0.0
132
Normal
0.0
446
Normal
0.0
433
Tumor
0.0
161
Tumor
0.0
412
Normal
0.0
277
Tumor
0.0
1032
Normal
0.0
272
Normal
0.0
185
Tumor
0.0
393
Tumor
0.0
492
Normal
0.0
944
Normal
0.0
863
Tumor
0.0
186
Normal
0.0
557
Tumor
0.0
567
Tumor
0.0
452
Normal
0.0
428
Normal
0.0
148
Normal
0.0
913
Tumor
0.0
365
Tumor
0.0
697
Tumor
0.0
777
Tumor
0.0
444
Normal
0.0
866
Normal
0.0
524
Normal
0.0
384
Normal
0.0
262
Normal
0.0
344
Normal
-0.1
756
Normal
-0.1
375
Tumor
-0.1
228
Normal
-0.1
332
Normal
-0.1
426
Normal
-0.1
716
Normal
-0.1
926
Normal
-0.1
721
Tumor
-0.1
744
Normal
-0.1
858
Normal
-0.1
628
Normal
-0.1
498
Normal
-0.1
212
Normal
-0.1
966
Normal
-0.1
456
Normal
-0.1
824
Normal
-0.1
482
Normal
-0.1
1028
Normal
-0.1
952
Normal
-0.1
258
Normal
-0.1
816
Normal
-0.1
227
Tumor
-0.1
462
Normal
-0.1
434
Normal
-0.1
224
Normal
-0.1
545
Tumor
-0.1
196
Normal
-0.1
618
Normal
-0.1
984
Normal
-0.1
352
Normal
-0.1
571
Tumor
-0.1
484
Normal
-0.1
1014
Normal
-0.1
963
Tumor
-0.1
883
Tumor
-0.1
954
Normal
-0.1
172
Normal
-0.1
978
Normal
-0.1
487
Tumor
-0.1
672
Normal
-0.1
125
Tumor
-0.1
432
Normal
-0.1
696
Normal
-0.1
1022
Normal
-0.1
938
Normal
-0.1
528
Normal
-0.1
714
Normal
-0.1
376
Normal
-0.1
778
Normal
-0.1
314
Normal
-0.1
213
Tumor
-0.1
636
Normal
-0.2
642
Normal
-0.2
414
Normal
-0.2
464
Normal
-0.2
814
Normal
-0.2
356
Normal
-0.2
742
Normal
-0.2
1044
Normal
-0.2
364
Normal
-0.2
737
Tumor
-0.2
572
Normal
-0.2
232
Normal
-0.2
261
Tumor
-0.2
574
Normal
-0.2
662
Normal
-0.2
912
Normal
-0.2
222
Normal
-0.2
786
Normal
-0.2
383
Tumor
-0.2
695
Tumor
-0.2
982
Normal
-0.2
146
Normal
-0.2
392
Normal
-0.2
648
Normal
-0.2
723
Tumor
-0.2
516
Normal
-0.2
286
Normal
-0.2
162
Normal
-0.2
554
Normal
-0.2
436
Normal
-0.2
817
Tumor
-0.2
131
Tumor
-0.2
142
Normal
-0.2
884
Normal
-0.2
267
Tumor
-0.2
922
Normal
-0.2
488
Normal
-0.2
396
Normal
-0.2
145
Tumor
-0.2
363
Tumor
-0.2
217
Tumor
-0.2
466
Normal
-0.2
666
Normal
-0.2
1015
Tumor
-0.2
743
Tumor
-0.2
514
Normal
-0.3
568
Normal
-0.3
423
Tumor
-0.3
914
Normal
-0.3
686
Normal
-0.3
342
Normal
-0.3
1016
Normal
-0.3
882
Normal
-0.3
862
Normal
-0.3
518
Normal
-0.3
664
Normal
-0.3
1046
Normal
-0.3
818
Normal
-0.3
878
Normal
-0.3
141
Tumor
-0.3
298
Normal
-0.3
964
Normal
-0.3
427
Tumor
-0.3
491
Tumor
-0.3
368
Normal
-0.3
331
Tumor
-0.3
727
Tumor
-0.4
311
Tumor
-0.4
394
Normal
-0.4
218
Normal
-0.4
671
Tumor
-0.4
395
Tumor
-0.4
698
Normal
-0.4
313
Tumor
-0.4
877
Tumor
-0.4
1026
Normal
-0.4
147
Tumor
-0.4
515
Tumor
-0.4
513
Tumor
-0.4
917
Tumor
-0.4
573
Tumor
-0.5
724
Normal
-0.5
943
Tumor
-0.5
661
Tumor
-0.5
525
Tumor
-0.5
663
Tumor
-0.5
283
Tumor
-0.6
497
Tumor
-0.6
967
Tumor
-0.6
526
Normal
-0.6
463
Tumor
-0.7
385
Tumor
-0.9
865
Tumor
-1.0
211
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
