MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.7 nTPM
HPA Brain:3.7 nTPM
GTEx:1.7 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:8.4 nTPM
Mouse:193.1 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 3.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.2
1870 Female, age 42, unknown 3.8
2828 Female, age 72, unknown 3.7
2019 Male, age 18, unknown 3.6
2411 Female, age 72, unknown 3.6
1833 Male, age 53, unknown 3.5
2666 Male, age 74, left hemisphere 3.5
1830 Male, age 51, unknown 3.3
1827 Male, age 72, unknown 2.7
2219 Male, age 76, both hemispheres 2.4
2586 Male, age 75, left hemisphere 2.2
Dorsal raphe nucleus
nTPM: 3.7
2750 Male, age 76, both hemispheres 4.4
2016 Female, age 72, unknown 4.0
2047 Male, age 72, unknown 3.8
1828 Male, age 53, unknown 3.5
2298 Female, age 72, unknown 2.8
Inferior colliculus
nTPM: 3.1
1848 Female, age 42, unknown 3.1
2097 Female, age 72, unknown 3.1
1890 Male, age 53, unknown 3.0
2849 Male, age 72, unknown 3.0
Median raphe nucleus
nTPM: 2.9
2220 Male, age 76, midline 2.9
Periaquaductal grey, anterior
nTPM: 2.9
2502 Female, age 75, unknown 3.1
1795 Male, age 51, unknown 3.0
1947 Male, age 18, unknown 2.8
Periaquaductal grey, dorsal
nTPM: 3.7
2850 Male, age 76, both hemispheres 4.7
1831 Male, age 72, unknown 3.7
1840 Male, age 53, unknown 3.3
2464 Female, age 72, unknown 3.1
Periaquaductal grey, lateral
nTPM: 3.4
2140 Male, age 76, both hemispheres 4.2
2053 Male, age 18, unknown 3.1
2272 Male, age 74, both hemispheres 3.0
Pretectal area
nTPM: 2.7
2224 Female, age 72, unknown 3.3
1817 Female, age 42, unknown 3.1
2667 Female, age 75, unknown 3.0
2825 Male, age 18, unknown 2.9
1815 Male, age 53, unknown 2.8
2273 Male, age 74, both hemispheres 2.8
1944 Female, age 72, unknown 2.7
2316 Male, age 76, right hemisphere 2.6
2007 Male, age 72, unknown 2.5
1816 Male, age 51, unknown 2.0
2407 Male, age 75, both hemispheres 2.0
Red nucleus
nTPM: 3.7
1821 Female, age 72, unknown 4.5
1954 Female, age 42, unknown 4.1
2769 Male, age 72, unknown 4.1
2823 Male, age 76, right hemisphere 4.1
1904 Male, age 53, unknown 3.9
1865 Male, age 51, unknown 3.8
2588 Male, age 74, left hemisphere 3.8
2227 Male, age 72, unknown 3.6
2503 Female, age 72, unknown 3.5
2725 Female, age 75, unknown 3.4
2785 Male, age 18, unknown 2.9
2584 Male, age 75, left hemisphere 2.7
Substantia nigra
nTPM: 3.3
2699 Male, age 18, unknown 4.9
2665 Male, age 74, both hemispheres 3.9
1889 Female, age 72, unknown 3.5
1851 Male, age 51, unknown 3.2
1941 Male, age 53, unknown 3.2
2409 Female, age 72, unknown 3.2
2241 Male, age 72, unknown 3.0
1916 Female, age 42, unknown 2.8
2590 Female, age 75, unknown 2.8
2583 Male, age 75, right hemisphere 2.7
Superior colliculus
nTPM: 2.9
1995 Male, age 72, unknown 3.6
1839 Male, age 51, unknown 3.5
2587 Male, age 74, left hemisphere 3.4
1913 Female, age 42, unknown 3.3
2668 Female, age 75, unknown 3.2
2087 Female, age 72, unknown 2.9
1895 Male, age 76, right hemisphere 2.8
1796 Male, age 53, unknown 2.6
2261 Male, age 18, unknown 2.3
2664 Male, age 75, both hemispheres 1.9
Ventral tegmental area
nTPM: 3.7
2223 Female, age 72, unknown 4.2
2021 Male, age 53, unknown 4.0
1942 Male, age 51, unknown 3.8
2218 Male, age 76, both hemispheres 3.4
2410 Female, age 72, unknown 3.4
1915 Female, age 42, unknown 3.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.7
Samples: 139

Max nTPM: 4.8
Min nTPM: 0.4
Std nTPM: 0.6
Median nTPM: 1.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 4.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 3.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 3.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 3.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 3.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 2.8
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 2.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 2.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.5
FF:10158-103A5 76 years, female 13.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 8.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.4
Samples: 4

Max nTPM: 9.5
Min nTPM: 7.6
Sample A Female 8.3
Sample B Female 8.2
Sample C Male 7.6
Sample D Male 9.5
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 9.3
Min nTPM: 5.7
Sample A Female 9.3
Sample B Female 9.3
Sample C Male 5.7
Sample D Male 5.9
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 8.4
Min nTPM: 6.6
Sample B Female 8.4
Sample C Male 6.6
Sample D Male 7.4
Superior colliculi
nTPM: 6.3
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.9
Sample A Female 6.6
Sample B Female 5.9
Sample C Male 6.3
Sample D Male 6.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 193.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 193.2
Samples: 4

Max nTPM: 206.7
Min nTPM: 172.1
Sample A Male 172.1
Sample B Male 196.5
Sample C Female 206.7
Sample D Female 197.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
70813143 Antisense, RP_050712_03_C08, Mouse strain C57BL/6J (56 days, male) 9.3
71209841 Antisense, RP_050810_02_H08, Mouse strain C57BL/6J (56 days, male) 0.0

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