MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:23.3 nTPM
GTEx:28.7 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:61.2 nTPM
Mouse:98.5 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 23.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.7
2019 Male, age 18, unknown 23.0
2411 Female, age 72, unknown 22.4
2219 Male, age 76, both hemispheres 21.3
1870 Female, age 42, unknown 20.5
1827 Male, age 72, unknown 19.3
1833 Male, age 53, unknown 18.2
1830 Male, age 51, unknown 17.0
2586 Male, age 75, left hemisphere 16.8
2666 Male, age 74, left hemisphere 14.8
2828 Female, age 72, unknown 14.1
Dorsal raphe nucleus
nTPM: 20.4
1828 Male, age 53, unknown 25.4
2047 Male, age 72, unknown 21.8
2298 Female, age 72, unknown 20.9
2750 Male, age 76, both hemispheres 18.8
2016 Female, age 72, unknown 15.2
Inferior colliculus
nTPM: 20.7
2097 Female, age 72, unknown 24.4
1848 Female, age 42, unknown 21.2
1890 Male, age 53, unknown 19.1
2849 Male, age 72, unknown 17.8
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 19.6
1947 Male, age 18, unknown 22.4
1795 Male, age 51, unknown 18.8
2502 Female, age 75, unknown 17.5
Periaquaductal grey, dorsal
nTPM: 17.1
1840 Male, age 53, unknown 18.8
1831 Male, age 72, unknown 16.9
2850 Male, age 76, both hemispheres 16.7
2464 Female, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 14.8
2140 Male, age 76, both hemispheres 15.3
2053 Male, age 18, unknown 14.7
2272 Male, age 74, both hemispheres 14.3
Pretectal area
nTPM: 21.2
1817 Female, age 42, unknown 27.3
2007 Male, age 72, unknown 26.0
1816 Male, age 51, unknown 25.4
1944 Female, age 72, unknown 25.3
2667 Female, age 75, unknown 23.0
2224 Female, age 72, unknown 21.9
1815 Male, age 53, unknown 20.0
2273 Male, age 74, both hemispheres 17.9
2825 Male, age 18, unknown 16.4
2316 Male, age 76, right hemisphere 15.9
2407 Male, age 75, both hemispheres 14.0
Red nucleus
nTPM: 20.1
1821 Female, age 72, unknown 35.8
1954 Female, age 42, unknown 23.5
2503 Female, age 72, unknown 20.4
2725 Female, age 75, unknown 20.0
2785 Male, age 18, unknown 19.3
1865 Male, age 51, unknown 19.2
2823 Male, age 76, right hemisphere 19.1
2227 Male, age 72, unknown 18.8
1904 Male, age 53, unknown 18.3
2769 Male, age 72, unknown 18.2
2588 Male, age 74, left hemisphere 14.9
2584 Male, age 75, left hemisphere 14.0
Substantia nigra
nTPM: 23.3
1916 Female, age 42, unknown 29.5
2241 Male, age 72, unknown 27.9
1941 Male, age 53, unknown 27.7
1889 Female, age 72, unknown 25.3
2665 Male, age 74, both hemispheres 24.4
1851 Male, age 51, unknown 23.7
2699 Male, age 18, unknown 19.9
2409 Female, age 72, unknown 19.0
2590 Female, age 75, unknown 18.9
2583 Male, age 75, right hemisphere 16.4
Superior colliculus
nTPM: 18.6
1895 Male, age 76, right hemisphere 25.8
2668 Female, age 75, unknown 21.7
2087 Female, age 72, unknown 20.5
2587 Male, age 74, left hemisphere 20.5
1839 Male, age 51, unknown 18.8
2261 Male, age 18, unknown 18.7
1796 Male, age 53, unknown 17.4
1913 Female, age 42, unknown 15.5
1995 Male, age 72, unknown 13.8
2664 Male, age 75, both hemispheres 13.4
Ventral tegmental area
nTPM: 19.1
1915 Female, age 42, unknown 22.6
2218 Male, age 76, both hemispheres 22.4
2410 Female, age 72, unknown 22.0
2223 Female, age 72, unknown 16.8
1942 Male, age 51, unknown 16.5
2021 Male, age 53, unknown 14.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 72.0
Min nTPM: 10.3
Std nTPM: 9.9
Median nTPM: 26.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 72.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 66.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 61.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 51.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 50.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 46.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 43.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 42.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 42.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 41.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 61.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.0
Samples: 4

Max nTPM: 76.7
Min nTPM: 43.9
Sample A Female 76.7
Sample B Female 55.2
Sample C Male 43.9
Sample D Male 56.2
Midbrain
nTPM: 60.3
Samples: 4

Max nTPM: 74.3
Min nTPM: 43.8
Sample A Female 74.3
Sample B Female 73.2
Sample C Male 49.8
Sample D Male 43.8
Periaqueductal gray
nTPM: 49.0
Samples: 3

Max nTPM: 57.2
Min nTPM: 43.1
Sample B Female 57.2
Sample C Male 43.1
Sample D Male 46.8
Superior colliculi
nTPM: 61.2
Samples: 4

Max nTPM: 74.4
Min nTPM: 49.0
Sample A Female 74.4
Sample B Female 49.0
Sample C Male 64.1
Sample D Male 57.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 98.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.6
Samples: 4

Max nTPM: 101.8
Min nTPM: 96.2
Sample A Male 97.5
Sample B Male 101.8
Sample C Female 98.7
Sample D Female 96.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
512531 Antisense, RP_040809_02_B03, Mouse strain C57BL/6J (56 days, male) 0.4

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