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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R5B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP2R5B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
2.0
135
Tumor
1.4
137
Tumor
1.3
351
Tumor
1.3
353
Tumor
1.3
145
Tumor
1.3
641
Tumor
1.2
123
Tumor
1.2
341
Tumor
1.1
627
Tumor
1.1
628
Normal
1.0
617
Tumor
1.0
636
Normal
1.0
112
Tumor
1.0
114
Normal
1.0
375
Tumor
1.0
125
Tumor
0.9
126
Normal
0.9
615
Tumor
0.9
127
Tumor
0.8
141
Tumor
0.8
618
Normal
0.8
138
Normal
0.8
616
Normal
0.8
642
Normal
0.8
113
Tumor
0.7
277
Tumor
0.7
663
Tumor
0.7
313
Tumor
0.7
342
Normal
0.7
354
Normal
0.7
146
Normal
0.7
357
Tumor
0.7
132
Normal
0.6
128
Normal
0.6
136
Normal
0.5
124
Normal
0.5
257
Tumor
0.5
147
Tumor
0.5
863
Tumor
0.5
312
Normal
0.5
877
Tumor
0.5
715
Tumor
0.5
223
Tumor
0.5
491
Tumor
0.5
661
Tumor
0.5
297
Tumor
0.5
343
Tumor
0.5
533
Tumor
0.5
131
Tumor
0.5
332
Normal
0.4
917
Tumor
0.4
737
Tumor
0.4
213
Tumor
0.4
777
Tumor
0.4
352
Normal
0.4
311
Tumor
0.4
298
Normal
0.4
111
Normal
0.4
1027
Tumor
0.4
278
Normal
0.4
283
Tumor
0.4
344
Normal
0.4
314
Normal
0.3
647
Tumor
0.3
695
Tumor
0.3
685
Tumor
0.3
365
Tumor
0.3
467
Tumor
0.3
814
Normal
0.3
713
Tumor
0.3
331
Tumor
0.3
868
Normal
0.3
384
Normal
0.3
185
Tumor
0.3
187
Tumor
0.3
745
Tumor
0.3
261
Tumor
0.3
455
Tumor
0.3
573
Tumor
0.3
463
Tumor
0.2
746
Normal
0.2
538
Normal
0.2
271
Tumor
0.2
857
Tumor
0.2
943
Tumor
0.2
497
Tumor
0.2
393
Tumor
0.2
816
Normal
0.2
527
Tumor
0.2
721
Tumor
0.2
743
Tumor
0.2
881
Tumor
0.2
434
Normal
0.2
366
Normal
0.2
686
Normal
0.2
451
Tumor
0.2
285
Tumor
0.2
813
Tumor
0.2
362
Normal
0.2
368
Normal
0.2
823
Tumor
0.2
142
Normal
0.2
358
Normal
0.2
272
Normal
0.2
478
Normal
0.2
411
Tumor
0.1
462
Normal
0.1
481
Tumor
0.1
523
Tumor
0.1
818
Normal
0.1
824
Normal
0.1
192
Normal
0.1
212
Normal
0.1
224
Normal
0.1
526
Normal
0.1
858
Normal
0.1
671
Tumor
0.1
744
Normal
0.1
161
Tumor
0.1
716
Normal
0.1
515
Tumor
0.1
785
Tumor
0.1
911
Tumor
0.1
557
Tumor
0.1
267
Tumor
0.1
851
Tumor
0.1
262
Normal
0.1
1045
Tumor
0.1
482
Normal
0.1
786
Normal
0.1
977
Tumor
0.1
461
Tumor
0.1
361
Tumor
0.1
447
Tumor
0.1
815
Tumor
0.1
727
Tumor
0.1
385
Tumor
0.1
1043
Tumor
0.1
231
Tumor
0.1
356
Normal
0.1
376
Normal
0.1
546
Normal
0.1
756
Normal
0.1
471
Tumor
0.1
513
Tumor
0.1
383
Tumor
0.0
436
Normal
0.0
227
Tumor
0.0
518
Normal
0.0
427
Tumor
0.0
517
Tumor
0.0
874
Normal
0.0
852
Normal
0.0
472
Normal
0.0
778
Normal
0.0
286
Normal
0.0
882
Normal
0.0
537
Tumor
0.0
954
Normal
0.0
1025
Tumor
0.0
514
Normal
0.0
416
Normal
0.0
188
Normal
0.0
363
Tumor
0.0
724
Normal
0.0
866
Normal
0.0
425
Tumor
0.0
878
Normal
0.0
228
Normal
0.0
1044
Normal
0.0
432
Normal
0.0
525
Tumor
0.0
916
Normal
0.0
433
Tumor
0.0
284
Normal
0.0
528
Normal
0.0
741
Tumor
0.0
722
Normal
0.0
431
Tumor
0.0
714
Normal
0.0
428
Normal
0.0
755
Tumor
0.0
1021
Tumor
0.0
873
Tumor
0.0
862
Normal
0.0
956
Normal
0.0
211
Tumor
0.0
937
Tumor
0.0
171
Tumor
0.0
474
Normal
0.0
421
Tumor
0.0
867
Tumor
0.0
392
Normal
0.0
955
Tumor
-0.1
516
Normal
-0.1
1015
Tumor
-0.1
728
Normal
-0.1
698
Normal
-0.1
738
Normal
-0.1
534
Normal
-0.1
443
Tumor
-0.1
696
Normal
-0.1
944
Normal
-0.1
742
Normal
-0.1
218
Normal
-0.1
446
Normal
-0.1
817
Tumor
-0.1
444
Normal
-0.1
574
Normal
-0.1
975
Tumor
-0.1
477
Tumor
-0.1
498
Normal
-0.1
524
Normal
-0.1
952
Normal
-0.1
1016
Normal
-0.1
327
Tumor
-0.1
214
Normal
-0.1
554
Normal
-0.1
468
Normal
-0.1
864
Normal
-0.1
938
Normal
-0.1
1022
Normal
-0.1
386
Normal
-0.1
232
Normal
-0.1
412
Normal
-0.1
328
Normal
-0.1
488
Normal
-0.1
553
Tumor
-0.1
217
Tumor
-0.1
186
Normal
-0.1
435
Tumor
-0.1
493
Tumor
-0.1
148
Normal
-0.2
662
Normal
-0.2
221
Tumor
-0.2
413
Tumor
-0.2
456
Normal
-0.2
258
Normal
-0.2
452
Normal
-0.2
466
Normal
-0.2
487
Tumor
-0.2
914
Normal
-0.2
865
Tumor
-0.2
1046
Normal
-0.2
422
Normal
-0.2
448
Normal
-0.2
367
Tumor
-0.2
1028
Normal
-0.2
445
Tumor
-0.2
883
Tumor
-0.2
191
Tumor
-0.2
571
Tumor
-0.2
268
Normal
-0.2
1026
Normal
-0.2
913
Tumor
-0.2
196
Normal
-0.2
861
Tumor
-0.2
884
Normal
-0.2
1041
Tumor
-0.2
483
Tumor
-0.2
536
Normal
-0.2
723
Tumor
-0.2
953
Tumor
-0.3
924
Normal
-0.3
545
Tumor
-0.3
195
Tumor
-0.3
563
Tumor
-0.3
492
Normal
-0.3
414
Normal
-0.3
567
Tumor
-0.3
564
Normal
-0.3
172
Normal
-0.3
364
Normal
-0.3
424
Normal
-0.3
982
Normal
-0.3
922
Normal
-0.3
494
Normal
-0.3
391
Tumor
-0.3
387
Tumor
-0.3
648
Normal
-0.3
426
Normal
-0.3
968
Normal
-0.3
558
Normal
-0.3
976
Normal
-0.3
664
Normal
-0.3
983
Tumor
-0.3
926
Normal
-0.3
396
Normal
-0.3
415
Tumor
-0.3
665
Tumor
-0.3
572
Normal
-0.3
465
Tumor
-0.3
984
Normal
-0.3
484
Normal
-0.3
912
Normal
-0.3
395
Tumor
-0.3
967
Tumor
-0.4
394
Normal
-0.4
423
Tumor
-0.4
388
Normal
-0.4
915
Tumor
-0.4
918
Normal
-0.4
1031
Tumor
-0.4
568
Normal
-0.4
1013
Tumor
-0.4
162
Normal
-0.4
921
Tumor
-0.4
473
Tumor
-0.4
964
Normal
-0.4
1014
Normal
-0.4
222
Normal
-0.4
697
Tumor
-0.5
355
Tumor
-0.5
923
Tumor
-0.5
672
Normal
-0.5
464
Normal
-0.5
958
Normal
-0.5
978
Normal
-0.5
981
Tumor
-0.5
925
Tumor
-0.5
966
Normal
-0.6
1032
Normal
-0.6
957
Tumor
-0.6
535
Tumor
-0.6
963
Tumor
-0.7
951
Tumor
-0.8
965
Tumor
-0.8
1042
Normal
-0.9
666
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
