MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA Brain:80.8 nTPM
GTEx:40.9 nTPM
FANTOM5:52.4 Scaled Tags Per Million
Pig:74.6 nTPM
Mouse:69.2 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.2
2666 Male, age 74, left hemisphere 101.1
2586 Male, age 75, left hemisphere 90.3
2828 Female, age 72, unknown 82.8
1827 Male, age 72, unknown 78.6
2219 Male, age 76, both hemispheres 76.0
2411 Female, age 72, unknown 69.6
1870 Female, age 42, unknown 62.2
2019 Male, age 18, unknown 62.2
1833 Male, age 53, unknown 61.3
1830 Male, age 51, unknown 58.2
Dorsal raphe nucleus
nTPM: 65.6
2298 Female, age 72, unknown 73.8
2750 Male, age 76, both hemispheres 71.3
2047 Male, age 72, unknown 68.7
1828 Male, age 53, unknown 61.6
2016 Female, age 72, unknown 52.5
Inferior colliculus
nTPM: 63.6
2849 Male, age 72, unknown 68.5
2097 Female, age 72, unknown 64.6
1848 Female, age 42, unknown 63.9
1890 Male, age 53, unknown 57.4
Median raphe nucleus
nTPM: 75.4
2220 Male, age 76, midline 75.4
Periaquaductal grey, anterior
nTPM: 78.7
1795 Male, age 51, unknown 85.7
1947 Male, age 18, unknown 78.1
2502 Female, age 75, unknown 72.4
Periaquaductal grey, dorsal
nTPM: 60.6
2464 Female, age 72, unknown 63.5
1840 Male, age 53, unknown 62.9
1831 Male, age 72, unknown 61.5
2850 Male, age 76, both hemispheres 54.4
Periaquaductal grey, lateral
nTPM: 54.9
2053 Male, age 18, unknown 63.0
2140 Male, age 76, both hemispheres 53.6
2272 Male, age 74, both hemispheres 48.2
Pretectal area
nTPM: 79.1
1816 Male, age 51, unknown 105.6
1944 Female, age 72, unknown 95.5
2007 Male, age 72, unknown 94.3
1815 Male, age 53, unknown 92.1
1817 Female, age 42, unknown 88.8
2667 Female, age 75, unknown 75.0
2407 Male, age 75, both hemispheres 74.0
2316 Male, age 76, right hemisphere 69.7
2825 Male, age 18, unknown 69.6
2224 Female, age 72, unknown 61.5
2273 Male, age 74, both hemispheres 43.9
Red nucleus
nTPM: 64.1
2584 Male, age 75, left hemisphere 81.2
2588 Male, age 74, left hemisphere 70.3
2785 Male, age 18, unknown 70.3
2823 Male, age 76, right hemisphere 67.8
1904 Male, age 53, unknown 63.7
2725 Female, age 75, unknown 63.7
1821 Female, age 72, unknown 62.7
2769 Male, age 72, unknown 61.1
2227 Male, age 72, unknown 57.8
1954 Female, age 42, unknown 57.6
2503 Female, age 72, unknown 57.4
1865 Male, age 51, unknown 55.5
Substantia nigra
nTPM: 80.8
1916 Female, age 42, unknown 101.5
2665 Male, age 74, both hemispheres 98.6
1941 Male, age 53, unknown 89.6
1889 Female, age 72, unknown 82.8
1851 Male, age 51, unknown 82.5
2583 Male, age 75, right hemisphere 79.3
2241 Male, age 72, unknown 72.2
2699 Male, age 18, unknown 71.6
2409 Female, age 72, unknown 65.5
2590 Female, age 75, unknown 64.3
Superior colliculus
nTPM: 75.0
2668 Female, age 75, unknown 102.2
2087 Female, age 72, unknown 87.7
2261 Male, age 18, unknown 84.6
1796 Male, age 53, unknown 81.3
2664 Male, age 75, both hemispheres 76.6
1895 Male, age 76, right hemisphere 73.7
1839 Male, age 51, unknown 65.1
1913 Female, age 42, unknown 62.9
1995 Male, age 72, unknown 61.6
2587 Male, age 74, left hemisphere 54.1
Ventral tegmental area
nTPM: 69.9
2410 Female, age 72, unknown 80.2
2218 Male, age 76, both hemispheres 77.7
1915 Female, age 42, unknown 75.6
1942 Male, age 51, unknown 72.9
2021 Male, age 53, unknown 62.5
2223 Female, age 72, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 139

Max nTPM: 111.2
Min nTPM: 16.9
Std nTPM: 15.8
Median nTPM: 38.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 111.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 79.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 70.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 70.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 69.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 69.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 68.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 66.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 52.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.4
FF:10158-103A5 76 years, female 52.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 74.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.0
Samples: 4

Max nTPM: 80.6
Min nTPM: 49.3
Sample A Female 80.6
Sample B Female 49.3
Sample C Male 77.4
Sample D Male 52.7
Midbrain
nTPM: 74.6
Samples: 4

Max nTPM: 123.0
Min nTPM: 53.5
Sample A Female 55.0
Sample B Female 53.5
Sample C Male 123.0
Sample D Male 67.0
Periaqueductal gray
nTPM: 47.6
Samples: 3

Max nTPM: 55.4
Min nTPM: 41.8
Sample B Female 45.6
Sample C Male 55.4
Sample D Male 41.8
Superior colliculi
nTPM: 71.9
Samples: 4

Max nTPM: 96.6
Min nTPM: 52.7
Sample A Female 64.2
Sample B Female 52.7
Sample C Male 96.6
Sample D Male 73.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 69.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.2
Samples: 4

Max nTPM: 73.2
Min nTPM: 66.3
Sample A Male 73.2
Sample B Male 66.3
Sample C Female 66.3
Sample D Female 71.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
68844032 Antisense, RP_050217_02_G06, Mouse strain C57BL/6J (56 days, male) 9.8
74819327 Antisense, RP_060315_02_E03, Mouse strain C57BL/6J (56 days, male) 5.7

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