We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIRT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
27.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
22.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SIRT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.8
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
57.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
53.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
50.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
45.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
44.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
37.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
31.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
29.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
28.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
28.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
26.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
24.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.7
627
Tumor
1.1
443
Tumor
1.1
487
Tumor
0.9
112
Tumor
0.9
745
Tumor
0.9
571
Tumor
0.8
463
Tumor
0.8
341
Tumor
0.8
465
Tumor
0.6
125
Tumor
0.6
393
Tumor
0.5
527
Tumor
0.5
953
Tumor
0.5
221
Tumor
0.5
851
Tumor
0.5
421
Tumor
0.5
425
Tumor
0.5
445
Tumor
0.4
481
Tumor
0.4
231
Tumor
0.4
483
Tumor
0.4
663
Tumor
0.4
431
Tumor
0.4
557
Tumor
0.4
1013
Tumor
0.4
357
Tumor
0.4
873
Tumor
0.4
124
Normal
0.4
123
Tumor
0.3
277
Tumor
0.3
567
Tumor
0.3
515
Tumor
0.3
433
Tumor
0.3
977
Tumor
0.3
147
Tumor
0.3
537
Tumor
0.3
1045
Tumor
0.3
365
Tumor
0.3
975
Tumor
0.3
261
Tumor
0.3
641
Tumor
0.3
257
Tumor
0.3
921
Tumor
0.2
477
Tumor
0.2
222
Normal
0.2
137
Tumor
0.2
392
Normal
0.2
1021
Tumor
0.2
785
Tumor
0.2
435
Tumor
0.2
461
Tumor
0.2
553
Tumor
0.2
863
Tumor
0.1
271
Tumor
0.1
361
Tumor
0.1
867
Tumor
0.1
1028
Normal
0.1
744
Normal
0.1
497
Tumor
0.1
517
Tumor
0.1
493
Tumor
0.1
353
Tumor
0.1
881
Tumor
0.1
615
Tumor
0.1
865
Tumor
0.1
368
Normal
0.1
952
Normal
0.1
223
Tumor
0.1
213
Tumor
0.1
127
Tumor
0.1
218
Normal
0.1
697
Tumor
0.1
635
Tumor
0.1
523
Tumor
0.1
452
Normal
0.1
963
Tumor
0.1
128
Normal
0.1
564
Normal
0.1
861
Tumor
0.1
913
Tumor
0.1
1041
Tumor
0.1
823
Tumor
0.1
533
Tumor
0.1
411
Tumor
0.1
171
Tumor
0.1
355
Tumor
0.1
376
Normal
0.1
384
Normal
0.1
642
Normal
0.1
857
Tumor
0.1
466
Normal
0.1
882
Normal
0.1
1014
Normal
0.1
1044
Normal
0.1
878
Normal
0.1
224
Normal
0.1
468
Normal
0.0
142
Normal
0.0
954
Normal
0.0
162
Normal
0.0
232
Normal
0.0
423
Tumor
0.0
383
Tumor
0.0
944
Normal
0.0
982
Normal
0.0
228
Normal
0.0
984
Normal
0.0
297
Tumor
0.0
394
Normal
0.0
746
Normal
0.0
111
Normal
0.0
536
Normal
0.0
286
Normal
0.0
616
Normal
0.0
214
Normal
0.0
446
Normal
0.0
332
Normal
0.0
354
Normal
0.0
1043
Tumor
0.0
138
Normal
0.0
981
Tumor
0.0
714
Normal
0.0
145
Tumor
0.0
722
Normal
0.0
1026
Normal
0.0
172
Normal
0.0
864
Normal
0.0
955
Tumor
0.0
313
Tumor
0.0
528
Normal
0.0
298
Normal
0.0
436
Normal
0.0
727
Tumor
0.0
462
Normal
0.0
196
Normal
0.0
672
Normal
0.0
698
Normal
0.0
883
Tumor
0.0
914
Normal
0.0
816
Normal
0.0
737
Tumor
0.0
538
Normal
0.0
786
Normal
0.0
568
Normal
0.0
738
Normal
0.0
342
Normal
0.0
356
Normal
0.0
314
Normal
0.0
456
Normal
0.0
135
Tumor
0.0
192
Normal
0.0
344
Normal
0.0
434
Normal
0.0
1016
Normal
0.0
968
Normal
0.0
728
Normal
0.0
636
Normal
0.0
455
Tumor
0.0
966
Normal
0.0
387
Tumor
0.0
951
Tumor
0.0
484
Normal
0.0
498
Normal
0.0
628
Normal
-0.1
554
Normal
-0.1
464
Normal
-0.1
352
Normal
-0.1
518
Normal
-0.1
491
Tumor
-0.1
572
Normal
-0.1
114
Normal
-0.1
526
Normal
-0.1
136
Normal
-0.1
695
Tumor
-0.1
432
Normal
-0.1
648
Normal
-0.1
777
Tumor
-0.1
685
Tumor
-0.1
424
Normal
-0.1
513
Tumor
-0.1
922
Normal
-0.1
272
Normal
-0.1
283
Tumor
-0.1
713
Tumor
-0.1
488
Normal
-0.1
686
Normal
-0.1
448
Normal
-0.1
741
Tumor
-0.1
721
Tumor
-0.1
212
Normal
-0.1
957
Tumor
-0.1
472
Normal
-0.1
1022
Normal
-0.1
618
Normal
-0.1
278
Normal
-0.1
915
Tumor
-0.1
388
Normal
-0.1
938
Normal
-0.1
742
Normal
-0.1
817
Tumor
-0.1
191
Tumor
-0.1
666
Normal
-0.1
824
Normal
-0.1
386
Normal
-0.1
778
Normal
-0.1
358
Normal
-0.1
978
Normal
-0.1
964
Normal
-0.1
756
Normal
-0.1
132
Normal
-0.1
148
Normal
-0.1
923
Tumor
-0.1
362
Normal
-0.1
813
Tumor
-0.1
563
Tumor
-0.1
364
Normal
-0.1
862
Normal
-0.1
546
Normal
-0.1
396
Normal
-0.1
258
Normal
-0.1
524
Normal
-0.1
866
Normal
-0.1
444
Normal
-0.1
534
Normal
-0.1
467
Tumor
-0.1
814
Normal
-0.1
574
Normal
-0.1
414
Normal
-0.1
558
Normal
-0.1
696
Normal
-0.1
874
Normal
-0.1
967
Tumor
-0.1
375
Tumor
-0.1
146
Normal
-0.1
217
Tumor
-0.1
412
Normal
-0.1
126
Normal
-0.1
327
Tumor
-0.1
366
Normal
-0.1
185
Tumor
-0.1
911
Tumor
-0.1
343
Tumor
-0.1
724
Normal
-0.1
664
Normal
-0.1
284
Normal
-0.1
422
Normal
-0.1
426
Normal
-0.1
525
Tumor
-0.2
1046
Normal
-0.2
912
Normal
-0.2
662
Normal
-0.2
723
Tumor
-0.2
956
Normal
-0.2
478
Normal
-0.2
474
Normal
-0.2
482
Normal
-0.2
858
Normal
-0.2
1032
Normal
-0.2
926
Normal
-0.2
573
Tumor
-0.2
328
Normal
-0.2
427
Tumor
-0.2
262
Normal
-0.2
1025
Tumor
-0.2
976
Normal
-0.2
716
Normal
-0.2
715
Tumor
-0.2
267
Tumor
-0.2
195
Tumor
-0.2
916
Normal
-0.2
852
Normal
-0.2
186
Normal
-0.2
494
Normal
-0.2
312
Normal
-0.2
514
Normal
-0.2
416
Normal
-0.2
943
Tumor
-0.2
818
Normal
-0.2
516
Normal
-0.2
363
Tumor
-0.2
113
Tumor
-0.2
884
Normal
-0.2
268
Normal
-0.2
924
Normal
-0.2
428
Normal
-0.2
545
Tumor
-0.2
451
Tumor
-0.3
492
Normal
-0.3
918
Normal
-0.3
1015
Tumor
-0.3
958
Normal
-0.3
868
Normal
-0.3
211
Tumor
-0.3
161
Tumor
-0.3
188
Normal
-0.3
647
Tumor
-0.3
187
Tumor
-0.3
415
Tumor
-0.3
471
Tumor
-0.3
1042
Normal
-0.3
311
Tumor
-0.3
755
Tumor
-0.3
447
Tumor
-0.3
617
Tumor
-0.4
141
Tumor
-0.4
395
Tumor
-0.4
661
Tumor
-0.4
925
Tumor
-0.4
1031
Tumor
-0.4
671
Tumor
-0.4
665
Tumor
-0.4
877
Tumor
-0.4
965
Tumor
-0.5
815
Tumor
-0.5
227
Tumor
-0.5
917
Tumor
-0.5
391
Tumor
-0.5
131
Tumor
-0.5
331
Tumor
-0.5
367
Tumor
-0.5
937
Tumor
-0.5
413
Tumor
-0.5
983
Tumor
-0.6
473
Tumor
-0.6
285
Tumor
-0.6
385
Tumor
-0.6
535
Tumor
-0.6
743
Tumor
-1.1
351
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
