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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSME4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSME4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
43.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
41.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
21.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.2
635
Tumor
1.1
487
Tumor
1.0
615
Tumor
0.9
367
Tumor
0.8
331
Tumor
0.7
533
Tumor
0.7
661
Tumor
0.6
573
Tumor
0.6
967
Tumor
0.6
1021
Tumor
0.5
387
Tumor
0.5
923
Tumor
0.5
131
Tumor
0.5
283
Tumor
0.5
571
Tumor
0.5
665
Tumor
0.5
525
Tumor
0.5
351
Tumor
0.5
443
Tumor
0.4
127
Tumor
0.4
427
Tumor
0.4
257
Tumor
0.4
436
Normal
0.4
473
Tumor
0.4
395
Tumor
0.4
671
Tumor
0.4
957
Tumor
0.4
423
Tumor
0.4
777
Tumor
0.4
222
Normal
0.4
391
Tumor
0.4
925
Tumor
0.4
513
Tumor
0.4
817
Tumor
0.4
873
Tumor
0.4
353
Tumor
0.4
223
Tumor
0.3
361
Tumor
0.3
172
Normal
0.3
564
Normal
0.3
743
Tumor
0.3
1031
Tumor
0.3
465
Tumor
0.3
983
Tumor
0.3
1027
Tumor
0.3
951
Tumor
0.3
724
Normal
0.3
517
Tumor
0.3
648
Normal
0.3
341
Tumor
0.3
148
Normal
0.3
388
Normal
0.3
425
Tumor
0.3
196
Normal
0.3
258
Normal
0.3
171
Tumor
0.3
285
Tumor
0.3
965
Tumor
0.3
745
Tumor
0.3
147
Tumor
0.3
432
Normal
0.3
162
Normal
0.3
1025
Tumor
0.3
647
Tumor
0.2
137
Tumor
0.2
568
Normal
0.2
491
Tumor
0.2
366
Normal
0.2
314
Normal
0.2
128
Normal
0.2
385
Tumor
0.2
616
Normal
0.2
271
Tumor
0.2
132
Normal
0.2
466
Normal
0.2
191
Tumor
0.2
446
Normal
0.2
627
Tumor
0.2
567
Tumor
0.2
231
Tumor
0.2
141
Tumor
0.2
426
Normal
0.2
394
Normal
0.2
298
Normal
0.2
424
Normal
0.2
278
Normal
0.2
484
Normal
0.2
396
Normal
0.2
433
Tumor
0.2
217
Tumor
0.2
313
Tumor
0.2
452
Normal
0.2
1013
Tumor
0.2
975
Tumor
0.2
497
Tumor
0.2
1015
Tumor
0.2
327
Tumor
0.2
161
Tumor
0.2
451
Tumor
0.2
365
Tumor
0.2
356
Normal
0.2
618
Normal
0.2
368
Normal
0.2
357
Tumor
0.2
414
Normal
0.2
272
Normal
0.1
113
Tumor
0.1
471
Tumor
0.1
697
Tumor
0.1
186
Normal
0.1
221
Tumor
0.1
713
Tumor
0.1
428
Normal
0.1
422
Normal
0.1
464
Normal
0.1
358
Normal
0.1
755
Tumor
0.1
297
Tumor
0.1
311
Tumor
0.1
545
Tumor
0.1
267
Tumor
0.1
214
Normal
0.1
666
Normal
0.1
523
Tumor
0.1
362
Normal
0.1
114
Normal
0.1
376
Normal
0.1
332
Normal
0.1
664
Normal
0.1
617
Tumor
0.1
1022
Normal
0.1
493
Tumor
0.1
342
Normal
0.1
111
Normal
0.1
213
Tumor
0.1
913
Tumor
0.1
468
Normal
0.1
867
Tumor
0.1
123
Tumor
0.1
135
Tumor
0.1
824
Normal
0.1
915
Tumor
0.1
456
Normal
0.1
546
Normal
0.1
125
Tumor
0.1
195
Tumor
0.1
448
Normal
0.1
534
Normal
0.1
262
Normal
0.1
742
Normal
0.1
1026
Normal
0.1
727
Tumor
0.1
435
Tumor
0.1
738
Normal
0.1
862
Normal
0.1
185
Tumor
0.1
937
Tumor
0.1
218
Normal
0.1
461
Tumor
0.1
482
Normal
0.1
462
Normal
0.1
187
Tumor
0.1
861
Tumor
0.1
642
Normal
0.1
232
Normal
0.1
363
Tumor
0.1
912
Normal
0.1
662
Normal
0.1
472
Normal
0.1
136
Normal
0.1
938
Normal
0.1
421
Tumor
0.1
392
Normal
0.0
447
Tumor
0.0
138
Normal
0.0
921
Tumor
0.0
818
Normal
0.0
527
Tumor
0.0
268
Normal
0.0
851
Tumor
0.0
1042
Normal
0.0
628
Normal
0.0
815
Tumor
0.0
823
Tumor
0.0
557
Tumor
0.0
393
Tumor
0.0
944
Normal
0.0
477
Tumor
0.0
1043
Tumor
0.0
188
Normal
0.0
816
Normal
0.0
535
Tumor
0.0
211
Tumor
0.0
943
Tumor
0.0
574
Normal
0.0
977
Tumor
0.0
882
Normal
0.0
914
Normal
0.0
1032
Normal
0.0
386
Normal
0.0
924
Normal
0.0
518
Normal
0.0
434
Normal
0.0
455
Tumor
0.0
953
Tumor
0.0
966
Normal
0.0
981
Tumor
0.0
858
Normal
0.0
572
Normal
0.0
982
Normal
0.0
416
Normal
0.0
722
Normal
0.0
746
Normal
0.0
723
Tumor
0.0
514
Normal
0.0
145
Tumor
0.0
1041
Tumor
0.0
874
Normal
0.0
636
Normal
0.0
878
Normal
0.0
964
Normal
0.0
922
Normal
0.0
344
Normal
0.0
756
Normal
0.0
978
Normal
0.0
714
Normal
0.0
553
Tumor
0.0
1028
Normal
0.0
881
Tumor
0.0
354
Normal
0.0
663
Tumor
0.0
312
Normal
0.0
786
Normal
0.0
918
Normal
0.0
384
Normal
0.0
737
Tumor
0.0
112
Tumor
0.0
227
Tumor
0.0
494
Normal
0.0
864
Normal
0.0
721
Tumor
0.0
474
Normal
-0.1
863
Tumor
-0.1
698
Normal
-0.1
488
Normal
-0.1
728
Normal
-0.1
328
Normal
-0.1
1016
Normal
-0.1
884
Normal
-0.1
785
Tumor
-0.1
284
Normal
-0.1
146
Normal
-0.1
467
Tumor
-0.1
744
Normal
-0.1
696
Normal
-0.1
515
Tumor
-0.1
686
Normal
-0.1
212
Normal
-0.1
481
Tumor
-0.1
228
Normal
-0.1
952
Normal
-0.1
126
Normal
-0.1
926
Normal
-0.1
916
Normal
-0.1
868
Normal
-0.1
364
Normal
-0.1
1046
Normal
-0.1
883
Tumor
-0.1
857
Tumor
-0.1
1014
Normal
-0.1
741
Tumor
-0.1
463
Tumor
-0.1
286
Normal
-0.1
558
Normal
-0.1
695
Tumor
-0.1
958
Normal
-0.1
526
Normal
-0.1
383
Tumor
-0.1
142
Normal
-0.1
716
Normal
-0.1
956
Normal
-0.1
411
Tumor
-0.1
955
Tumor
-0.1
976
Normal
-0.1
483
Tumor
-0.1
431
Tumor
-0.1
865
Tumor
-0.1
911
Tumor
-0.1
852
Normal
-0.1
412
Normal
-0.1
563
Tumor
-0.1
866
Normal
-0.1
444
Normal
-0.2
277
Tumor
-0.2
261
Tumor
-0.2
352
Normal
-0.2
375
Tumor
-0.2
814
Normal
-0.2
984
Normal
-0.2
538
Normal
-0.2
968
Normal
-0.2
528
Normal
-0.2
498
Normal
-0.2
877
Tumor
-0.2
954
Normal
-0.2
685
Tumor
-0.2
415
Tumor
-0.2
641
Tumor
-0.2
192
Normal
-0.2
124
Normal
-0.2
672
Normal
-0.2
554
Normal
-0.3
1044
Normal
-0.3
516
Normal
-0.3
355
Tumor
-0.3
778
Normal
-0.3
963
Tumor
-0.3
492
Normal
-0.3
343
Tumor
-0.3
917
Tumor
-0.3
224
Normal
-0.3
1045
Tumor
-0.3
813
Tumor
-0.3
445
Tumor
-0.3
524
Normal
-0.4
413
Tumor
-0.4
715
Tumor
-0.4
478
Normal
-0.4
536
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
