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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRIPAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
24.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRIPAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
30.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
24.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
17.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
16.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.6
1013
Tumor
1.0
777
Tumor
0.8
411
Tumor
0.8
473
Tumor
0.7
951
Tumor
0.7
863
Tumor
0.6
741
Tumor
0.6
533
Tumor
0.6
1027
Tumor
0.6
685
Tumor
0.6
231
Tumor
0.5
647
Tumor
0.5
953
Tumor
0.5
527
Tumor
0.5
695
Tumor
0.5
471
Tumor
0.5
515
Tumor
0.5
443
Tumor
0.5
327
Tumor
0.5
1031
Tumor
0.5
627
Tumor
0.5
861
Tumor
0.5
727
Tumor
0.5
365
Tumor
0.4
965
Tumor
0.4
537
Tumor
0.4
721
Tumor
0.4
257
Tumor
0.4
955
Tumor
0.4
981
Tumor
0.4
867
Tumor
0.4
785
Tumor
0.3
553
Tumor
0.3
524
Normal
0.3
937
Tumor
0.3
313
Tumor
0.3
361
Tumor
0.3
355
Tumor
0.3
957
Tumor
0.3
211
Tumor
0.3
416
Normal
0.3
477
Tumor
0.3
123
Tumor
0.3
883
Tumor
0.3
261
Tumor
0.3
913
Tumor
0.3
518
Normal
0.3
415
Tumor
0.3
916
Normal
0.3
513
Tumor
0.2
1021
Tumor
0.2
557
Tumor
0.2
952
Normal
0.2
137
Tumor
0.2
171
Tumor
0.2
1015
Tumor
0.2
125
Tumor
0.2
868
Normal
0.2
983
Tumor
0.2
921
Tumor
0.2
925
Tumor
0.2
351
Tumor
0.2
663
Tumor
0.2
271
Tumor
0.2
728
Normal
0.2
481
Tumor
0.2
431
Tumor
0.2
813
Tumor
0.2
484
Normal
0.2
461
Tumor
0.2
482
Normal
0.2
528
Normal
0.2
917
Tumor
0.2
445
Tumor
0.2
926
Normal
0.2
563
Tumor
0.2
964
Normal
0.2
1025
Tumor
0.2
423
Tumor
0.2
534
Normal
0.2
978
Normal
0.2
873
Tumor
0.2
697
Tumor
0.1
526
Normal
0.1
923
Tumor
0.1
1045
Tumor
0.1
696
Normal
0.1
387
Tumor
0.1
516
Normal
0.1
286
Normal
0.1
884
Normal
0.1
492
Normal
0.1
472
Normal
0.1
141
Tumor
0.1
212
Normal
0.1
412
Normal
0.1
328
Normal
0.1
364
Normal
0.1
497
Tumor
0.1
737
Tumor
0.1
221
Tumor
0.1
716
Normal
0.1
525
Tumor
0.1
498
Normal
0.1
1032
Normal
0.1
514
Normal
0.1
283
Tumor
0.1
641
Tumor
0.1
1028
Normal
0.1
554
Normal
0.1
778
Normal
0.1
357
Tumor
0.1
341
Tumor
0.1
474
Normal
0.1
944
Normal
0.1
567
Tumor
0.1
615
Tumor
0.1
375
Tumor
0.1
161
Tumor
0.1
823
Tumor
0.1
127
Tumor
0.1
1014
Normal
0.1
714
Normal
0.1
918
Normal
0.1
686
Normal
0.1
722
Normal
0.1
968
Normal
0.1
958
Normal
0.1
713
Tumor
0.1
465
Tumor
0.1
956
Normal
0.1
536
Normal
0.1
984
Normal
0.1
715
Tumor
0.1
824
Normal
0.1
966
Normal
0.1
147
Tumor
0.1
922
Normal
0.1
874
Normal
0.0
356
Normal
0.0
635
Tumor
0.0
738
Normal
0.0
724
Normal
0.0
353
Tumor
0.0
1016
Normal
0.0
786
Normal
0.0
723
Tumor
0.0
982
Normal
0.0
393
Tumor
0.0
924
Normal
0.0
545
Tumor
0.0
756
Normal
0.0
746
Normal
0.0
493
Tumor
0.0
814
Normal
0.0
494
Normal
0.0
628
Normal
0.0
558
Normal
0.0
262
Normal
0.0
448
Normal
0.0
386
Normal
0.0
858
Normal
0.0
1026
Normal
0.0
538
Normal
0.0
228
Normal
0.0
268
Normal
0.0
312
Normal
0.0
852
Normal
0.0
421
Tumor
0.0
218
Normal
0.0
478
Normal
0.0
488
Normal
0.0
938
Normal
0.0
546
Normal
0.0
436
Normal
0.0
367
Tumor
0.0
422
Normal
0.0
882
Normal
0.0
915
Tumor
0.0
864
Normal
0.0
136
Normal
0.0
976
Normal
0.0
258
Normal
0.0
1022
Normal
0.0
114
Normal
0.0
383
Tumor
0.0
142
Normal
0.0
1046
Normal
0.0
564
Normal
0.0
866
Normal
0.0
865
Tumor
0.0
1044
Normal
0.0
368
Normal
0.0
112
Tumor
0.0
462
Normal
0.0
424
Normal
0.0
132
Normal
0.0
636
Normal
0.0
284
Normal
0.0
396
Normal
0.0
523
Tumor
0.0
447
Tumor
0.0
912
Normal
0.0
113
Tumor
0.0
188
Normal
0.0
311
Tumor
0.0
224
Normal
0.0
1042
Normal
0.0
914
Normal
0.0
911
Tumor
0.0
126
Normal
0.0
362
Normal
0.0
391
Tumor
-0.1
954
Normal
-0.1
878
Normal
-0.1
444
Normal
-0.1
111
Normal
-0.1
816
Normal
-0.1
963
Tumor
-0.1
455
Tumor
-0.1
376
Normal
-0.1
572
Normal
-0.1
851
Tumor
-0.1
428
Normal
-0.1
661
Tumor
-0.1
128
Normal
-0.1
943
Tumor
-0.1
358
Normal
-0.1
616
Normal
-0.1
433
Tumor
-0.1
222
Normal
-0.1
862
Normal
-0.1
185
Tumor
-0.1
124
Normal
-0.1
618
Normal
-0.1
435
Tumor
-0.1
664
Normal
-0.1
352
Normal
-0.1
223
Tumor
-0.1
394
Normal
-0.1
366
Normal
-0.1
662
Normal
-0.1
138
Normal
-0.1
272
Normal
-0.1
698
Normal
-0.1
354
Normal
-0.1
666
Normal
-0.1
344
Normal
-0.1
881
Tumor
-0.1
568
Normal
-0.1
148
Normal
-0.1
414
Normal
-0.1
395
Tumor
-0.1
388
Normal
-0.1
491
Tumor
-0.1
745
Tumor
-0.1
642
Normal
-0.1
975
Tumor
-0.1
451
Tumor
-0.1
384
Normal
-0.1
277
Tumor
-0.1
648
Normal
-0.1
452
Normal
-0.1
298
Normal
-0.1
232
Normal
-0.1
214
Normal
-0.1
818
Normal
-0.1
187
Tumor
-0.1
817
Tumor
-0.1
574
Normal
-0.2
332
Normal
-0.2
217
Tumor
-0.2
742
Normal
-0.2
434
Normal
-0.2
135
Tumor
-0.2
464
Normal
-0.2
314
Normal
-0.2
426
Normal
-0.2
672
Normal
-0.2
392
Normal
-0.2
162
Normal
-0.2
146
Normal
-0.2
483
Tumor
-0.2
213
Tumor
-0.2
278
Normal
-0.2
463
Tumor
-0.2
145
Tumor
-0.2
571
Tumor
-0.2
468
Normal
-0.2
432
Normal
-0.2
857
Tumor
-0.2
535
Tumor
-0.2
172
Normal
-0.2
195
Tumor
-0.2
267
Tumor
-0.2
815
Tumor
-0.2
456
Normal
-0.2
967
Tumor
-0.2
467
Tumor
-0.2
446
Normal
-0.2
192
Normal
-0.2
196
Normal
-0.2
413
Tumor
-0.2
617
Tumor
-0.2
665
Tumor
-0.2
186
Normal
-0.2
977
Tumor
-0.2
466
Normal
-0.2
343
Tumor
-0.2
1041
Tumor
-0.2
285
Tumor
-0.3
342
Normal
-0.3
755
Tumor
-0.3
573
Tumor
-0.3
227
Tumor
-0.3
191
Tumor
-0.3
427
Tumor
-0.3
297
Tumor
-0.3
385
Tumor
-0.3
131
Tumor
-0.3
425
Tumor
-0.3
1043
Tumor
-0.4
744
Normal
-0.4
363
Tumor
-0.4
331
Tumor
-0.4
877
Tumor
-0.5
517
Tumor
-0.5
671
Tumor
-0.6
743
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
