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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFI35 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
214.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
164.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
163.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
155.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
129.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
116.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
114.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
108.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
102.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
102.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
100.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
97.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
97.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
95.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
95.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
95.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
94.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
91.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
90.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
89.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
89.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
88.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
85.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
84.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
83.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
83.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
83.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
82.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
82.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
79.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
76.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
75.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
74.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
74.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
72.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
71.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
71.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
71.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
70.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
70.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
69.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
68.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
67.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
67.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
66.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
66.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
65.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
64.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
64.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
64.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
64.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
64.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
63.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
63.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
63.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
63.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
62.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
61.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
61.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
61.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
61.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
60.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
60.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
60.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
60.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
58.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
57.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
56.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
56.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
56.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
55.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
55.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
55.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
55.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
54.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
53.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
52.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
51.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
51.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
51.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
51.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
48.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
48.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
47.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
47.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
47.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
47.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
47.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
46.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
45.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
45.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
45.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
45.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
44.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
43.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
43.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
43.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
42.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
41.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
41.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
40.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
39.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
38.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
35.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
34.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
34.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
33.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
33.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
32.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
32.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
30.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
29.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
28.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
27.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
23.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
22.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
21.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
18.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
17.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFI35 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.7
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
96.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
88.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
82.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
75.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
74.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
71.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
70.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
70.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
65.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
65.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
64.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
61.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
59.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
59.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
57.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
57.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
56.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
55.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
50.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
47.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
47.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
46.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
44.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
42.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
37.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
35.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
34.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
33.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
29.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
26.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
25.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
25.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
1.0
423
Tumor
0.8
635
Tumor
0.8
443
Tumor
0.8
141
Tumor
0.7
341
Tumor
0.7
525
Tumor
0.6
925
Tumor
0.6
557
Tumor
0.6
1021
Tumor
0.6
217
Tumor
0.5
647
Tumor
0.5
211
Tumor
0.5
213
Tumor
0.5
391
Tumor
0.4
123
Tumor
0.4
451
Tumor
0.4
311
Tumor
0.4
221
Tumor
0.4
695
Tumor
0.4
343
Tumor
0.4
497
Tumor
0.4
861
Tumor
0.4
921
Tumor
0.4
573
Tumor
0.4
533
Tumor
0.4
471
Tumor
0.4
1043
Tumor
0.4
465
Tumor
0.4
724
Normal
0.4
327
Tumor
0.4
537
Tumor
0.3
161
Tumor
0.3
937
Tumor
0.3
262
Normal
0.3
112
Tumor
0.3
393
Tumor
0.3
283
Tumor
0.3
435
Tumor
0.3
755
Tumor
0.3
563
Tumor
0.3
661
Tumor
0.3
1015
Tumor
0.3
434
Normal
0.3
951
Tumor
0.3
455
Tumor
0.3
125
Tumor
0.3
883
Tumor
0.3
367
Tumor
0.3
191
Tumor
0.3
375
Tumor
0.3
477
Tumor
0.3
493
Tumor
0.3
873
Tumor
0.2
361
Tumor
0.2
745
Tumor
0.2
978
Normal
0.2
385
Tumor
0.2
431
Tumor
0.2
977
Tumor
0.2
421
Tumor
0.2
383
Tumor
0.2
218
Normal
0.2
127
Tumor
0.2
1031
Tumor
0.2
461
Tumor
0.2
957
Tumor
0.2
741
Tumor
0.2
487
Tumor
0.2
171
Tumor
0.2
413
Tumor
0.2
376
Normal
0.2
727
Tumor
0.2
422
Normal
0.2
665
Tumor
0.2
913
Tumor
0.1
568
Normal
0.1
147
Tumor
0.1
567
Tumor
0.1
433
Tumor
0.1
187
Tumor
0.1
536
Normal
0.1
446
Normal
0.1
353
Tumor
0.1
395
Tumor
0.1
445
Tumor
0.1
424
Normal
0.1
357
Tumor
0.1
135
Tumor
0.1
362
Normal
0.1
185
Tumor
0.1
352
Normal
0.1
1045
Tumor
0.1
386
Normal
0.1
917
Tumor
0.1
286
Normal
0.1
222
Normal
0.1
126
Normal
0.1
332
Normal
0.1
124
Normal
0.1
396
Normal
0.1
272
Normal
0.1
814
Normal
0.1
284
Normal
0.1
223
Tumor
0.1
392
Normal
0.1
368
Normal
0.1
148
Normal
0.1
436
Normal
0.1
535
Tumor
0.1
944
Normal
0.1
415
Tumor
0.1
224
Normal
0.1
456
Normal
0.0
468
Normal
0.0
267
Tumor
0.0
956
Normal
0.0
188
Normal
0.0
641
Tumor
0.0
574
Normal
0.0
195
Tumor
0.0
192
Normal
0.0
715
Tumor
0.0
172
Normal
0.0
966
Normal
0.0
128
Normal
0.0
558
Normal
0.0
572
Normal
0.0
983
Tumor
0.0
366
Normal
0.0
564
Normal
0.0
444
Normal
0.0
617
Tumor
0.0
145
Tumor
0.0
432
Normal
0.0
824
Normal
0.0
426
Normal
0.0
416
Normal
0.0
636
Normal
0.0
268
Normal
0.0
412
Normal
0.0
384
Normal
0.0
553
Tumor
0.0
964
Normal
0.0
452
Normal
0.0
344
Normal
0.0
212
Normal
0.0
214
Normal
0.0
815
Tumor
0.0
723
Tumor
0.0
414
Normal
0.0
358
Normal
0.0
464
Normal
0.0
278
Normal
0.0
728
Normal
0.0
137
Tumor
0.0
387
Tumor
0.0
342
Normal
0.0
922
Normal
0.0
882
Normal
0.0
448
Normal
0.0
1044
Normal
0.0
114
Normal
0.0
355
Tumor
0.0
138
Normal
0.0
232
Normal
0.0
472
Normal
0.0
816
Normal
0.0
186
Normal
0.0
162
Normal
0.0
852
Normal
0.0
314
Normal
-0.1
975
Tumor
-0.1
662
Normal
-0.1
571
Tumor
-0.1
136
Normal
-0.1
1013
Tumor
-0.1
258
Normal
-0.1
686
Normal
-0.1
938
Normal
-0.1
1016
Normal
-0.1
534
Normal
-0.1
365
Tumor
-0.1
914
Normal
-0.1
1022
Normal
-0.1
388
Normal
-0.1
142
Normal
-0.1
132
Normal
-0.1
857
Tumor
-0.1
923
Tumor
-0.1
967
Tumor
-0.1
1028
Normal
-0.1
482
Normal
-0.1
546
Normal
-0.1
737
Tumor
-0.1
492
Normal
-0.1
428
Normal
-0.1
627
Tumor
-0.1
411
Tumor
-0.1
786
Normal
-0.1
696
Normal
-0.1
528
Normal
-0.1
915
Tumor
-0.1
111
Normal
-0.1
356
Normal
-0.1
554
Normal
-0.1
742
Normal
-0.1
312
Normal
-0.1
628
Normal
-0.1
523
Tumor
-0.1
721
Tumor
-0.1
954
Normal
-0.1
744
Normal
-0.1
851
Tumor
-0.1
984
Normal
-0.1
298
Normal
-0.1
228
Normal
-0.1
862
Normal
-0.1
425
Tumor
-0.1
1026
Normal
-0.1
952
Normal
-0.1
277
Tumor
-0.1
514
Normal
-0.1
1046
Normal
-0.1
351
Tumor
-0.1
313
Tumor
-0.1
354
Normal
-0.1
146
Normal
-0.1
271
Tumor
-0.1
524
Normal
-0.1
666
Normal
-0.1
427
Tumor
-0.1
196
Normal
-0.1
513
Tumor
-0.1
462
Normal
-0.2
328
Normal
-0.2
467
Tumor
-0.2
926
Normal
-0.2
538
Normal
-0.2
527
Tumor
-0.2
858
Normal
-0.2
955
Tumor
-0.2
756
Normal
-0.2
823
Tumor
-0.2
394
Normal
-0.2
648
Normal
-0.2
618
Normal
-0.2
918
Normal
-0.2
976
Normal
-0.2
864
Normal
-0.2
526
Normal
-0.2
1042
Normal
-0.2
981
Tumor
-0.2
924
Normal
-0.2
716
Normal
-0.2
672
Normal
-0.2
912
Normal
-0.2
722
Normal
-0.2
478
Normal
-0.2
1014
Normal
-0.2
261
Tumor
-0.2
911
Tumor
-0.2
878
Normal
-0.2
663
Tumor
-0.2
494
Normal
-0.2
778
Normal
-0.2
785
Tumor
-0.2
818
Normal
-0.2
884
Normal
-0.2
466
Normal
-0.2
746
Normal
-0.2
664
Normal
-0.2
515
Tumor
-0.2
874
Normal
-0.2
463
Tumor
-0.2
518
Normal
-0.2
866
Normal
-0.2
364
Normal
-0.2
227
Tumor
-0.2
867
Tumor
-0.2
285
Tumor
-0.2
916
Normal
-0.2
953
Tumor
-0.2
481
Tumor
-0.2
714
Normal
-0.2
616
Normal
-0.2
963
Tumor
-0.3
1032
Normal
-0.3
257
Tumor
-0.3
297
Tumor
-0.3
943
Tumor
-0.3
545
Tumor
-0.3
488
Normal
-0.3
738
Normal
-0.3
516
Normal
-0.3
865
Tumor
-0.3
484
Normal
-0.3
474
Normal
-0.3
363
Tumor
-0.3
642
Normal
-0.3
491
Tumor
-0.3
958
Normal
-0.3
615
Tumor
-0.4
777
Tumor
-0.4
698
Normal
-0.4
498
Normal
-0.4
813
Tumor
-0.4
447
Tumor
-0.4
968
Normal
-0.4
517
Tumor
-0.4
231
Tumor
-0.4
881
Tumor
-0.4
1041
Tumor
-0.4
473
Tumor
-0.5
868
Normal
-0.5
877
Tumor
-0.5
982
Normal
-0.5
685
Tumor
-0.5
713
Tumor
-0.6
671
Tumor
-0.6
1027
Tumor
-0.6
1025
Tumor
-0.6
331
Tumor
-0.6
863
Tumor
-0.6
483
Tumor
-0.7
965
Tumor
-0.7
817
Tumor
-0.7
743
Tumor
-1.5
697
Tumor
-1.5
131
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
