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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDH3G is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
172.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
150.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
133.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
127.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
126.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
122.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
121.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
117.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
107.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
105.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
101.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
100.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
97.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
96.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
94.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
87.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
86.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
86.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
86.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
81.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
81.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
80.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
79.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
78.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
77.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
77.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
77.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
75.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
74.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
70.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
70.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
70.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
68.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
68.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
68.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
66.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
66.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
64.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
64.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
63.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
63.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
63.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
62.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
61.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
61.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
61.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
60.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
59.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
59.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
59.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
59.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
58.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
58.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
58.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
58.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
58.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
57.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
56.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
56.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
55.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
54.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
54.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
54.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
54.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
53.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
52.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
52.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
52.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
52.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
52.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
52.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
51.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
50.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
50.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
50.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
49.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
49.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
49.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
48.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
48.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
48.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
48.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
47.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
47.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
47.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
46.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
46.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
45.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
45.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
45.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
45.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
44.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
40.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
40.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
39.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
39.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
38.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
38.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
37.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
37.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
36.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
36.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
36.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
36.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
35.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
35.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
34.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
32.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
31.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
31.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
31.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
31.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
31.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
30.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
30.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
29.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
28.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
28.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
28.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
26.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
24.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDH3G is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.2
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
215.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
119.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
87.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
82.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
72.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
71.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
69.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
67.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
65.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
63.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
59.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
57.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
57.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
55.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
54.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
52.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
51.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
50.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
43.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
42.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
38.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
37.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
35.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
34.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
33.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
32.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
28.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
27.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
26.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
25.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
20.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
925
Tumor
1.4
1027
Tumor
1.0
393
Tumor
1.0
411
Tumor
1.0
937
Tumor
0.9
785
Tumor
0.9
745
Tumor
0.8
571
Tumor
0.7
1013
Tumor
0.7
483
Tumor
0.7
615
Tumor
0.6
873
Tumor
0.6
227
Tumor
0.6
823
Tumor
0.6
557
Tumor
0.6
137
Tumor
0.6
431
Tumor
0.6
491
Tumor
0.6
923
Tumor
0.6
915
Tumor
0.6
443
Tumor
0.6
1043
Tumor
0.5
883
Tumor
0.5
171
Tumor
0.5
231
Tumor
0.5
513
Tumor
0.5
383
Tumor
0.4
697
Tumor
0.4
423
Tumor
0.4
1045
Tumor
0.4
713
Tumor
0.4
135
Tumor
0.4
957
Tumor
0.4
361
Tumor
0.4
635
Tumor
0.4
537
Tumor
0.4
865
Tumor
0.4
755
Tumor
0.3
487
Tumor
0.3
981
Tumor
0.3
665
Tumor
0.3
851
Tumor
0.3
257
Tumor
0.3
461
Tumor
0.3
563
Tumor
0.3
261
Tumor
0.3
954
Normal
0.3
445
Tumor
0.3
465
Tumor
0.3
127
Tumor
0.3
448
Normal
0.2
341
Tumor
0.2
195
Tumor
0.2
357
Tumor
0.2
524
Normal
0.2
145
Tumor
0.2
567
Tumor
0.2
953
Tumor
0.2
191
Tumor
0.2
1041
Tumor
0.2
452
Normal
0.2
365
Tumor
0.2
387
Tumor
0.2
213
Tumor
0.2
721
Tumor
0.2
534
Normal
0.2
944
Normal
0.2
863
Tumor
0.2
367
Tumor
0.2
473
Tumor
0.1
313
Tumor
0.1
686
Normal
0.1
527
Tumor
0.1
857
Tumor
0.1
636
Normal
0.1
1025
Tumor
0.1
161
Tumor
0.1
696
Normal
0.1
538
Normal
0.1
573
Tumor
0.1
1014
Normal
0.1
546
Normal
0.1
477
Tumor
0.1
1032
Normal
0.1
922
Normal
0.1
722
Normal
0.1
535
Tumor
0.1
185
Tumor
0.1
715
Tumor
0.1
214
Normal
0.1
778
Normal
0.1
553
Tumor
0.1
756
Normal
0.1
124
Normal
0.0
1028
Normal
0.0
471
Tumor
0.0
698
Normal
0.0
528
Normal
0.0
481
Tumor
0.0
114
Normal
0.0
536
Normal
0.0
376
Normal
0.0
224
Normal
0.0
142
Normal
0.0
478
Normal
0.0
982
Normal
0.0
421
Tumor
0.0
394
Normal
0.0
515
Tumor
0.0
554
Normal
0.0
392
Normal
0.0
852
Normal
0.0
113
Tumor
0.0
468
Normal
0.0
228
Normal
0.0
1015
Tumor
0.0
695
Tumor
0.0
262
Normal
0.0
813
Tumor
0.0
815
Tumor
0.0
716
Normal
0.0
727
Tumor
0.0
375
Tumor
0.0
284
Normal
0.0
415
Tumor
0.0
984
Normal
0.0
447
Tumor
0.0
432
Normal
0.0
128
Normal
0.0
685
Tumor
0.0
455
Tumor
0.0
924
Normal
0.0
332
Normal
0.0
328
Normal
0.0
433
Tumor
0.0
523
Tumor
0.0
952
Normal
0.0
356
Normal
0.0
926
Normal
0.0
1016
Normal
0.0
1026
Normal
0.0
642
Normal
0.0
267
Tumor
0.0
864
Normal
0.0
526
Normal
0.0
867
Tumor
0.0
412
Normal
0.0
628
Normal
0.0
126
Normal
0.0
533
Tumor
0.0
916
Normal
0.0
388
Normal
0.0
196
Normal
0.0
364
Normal
-0.1
218
Normal
-0.1
558
Normal
-0.1
434
Normal
-0.1
416
Normal
-0.1
786
Normal
-0.1
112
Tumor
-0.1
618
Normal
-0.1
1022
Normal
-0.1
286
Normal
-0.1
187
Tumor
-0.1
186
Normal
-0.1
123
Tumor
-0.1
363
Tumor
-0.1
494
Normal
-0.1
1044
Normal
-0.1
232
Normal
-0.1
385
Tumor
-0.1
384
Normal
-0.1
358
Normal
-0.1
641
Tumor
-0.1
1046
Normal
-0.1
1031
Tumor
-0.1
436
Normal
-0.1
616
Normal
-0.1
467
Tumor
-0.1
866
Normal
-0.1
492
Normal
-0.1
978
Normal
-0.1
956
Normal
-0.1
516
Normal
-0.1
977
Tumor
-0.1
435
Tumor
-0.1
672
Normal
-0.1
568
Normal
-0.1
368
Normal
-0.1
488
Normal
-0.1
278
Normal
-0.1
858
Normal
-0.1
1042
Normal
-0.1
824
Normal
-0.1
355
Tumor
-0.1
212
Normal
-0.1
938
Normal
-0.1
963
Tumor
-0.1
862
Normal
-0.1
352
Normal
-0.1
878
Normal
-0.1
422
Normal
-0.1
354
Normal
-0.1
742
Normal
-0.1
647
Tumor
-0.1
564
Normal
-0.1
111
Normal
-0.1
914
Normal
-0.1
882
Normal
-0.1
574
Normal
-0.1
285
Tumor
-0.1
386
Normal
-0.1
148
Normal
-0.1
344
Normal
-0.1
951
Tumor
-0.1
868
Normal
-0.1
966
Normal
-0.1
514
Normal
-0.1
861
Tumor
-0.1
327
Tumor
-0.1
395
Tumor
-0.2
427
Tumor
-0.2
147
Tumor
-0.2
525
Tumor
-0.2
484
Normal
-0.2
472
Normal
-0.2
662
Normal
-0.2
572
Normal
-0.2
976
Normal
-0.2
498
Normal
-0.2
518
Normal
-0.2
968
Normal
-0.2
444
Normal
-0.2
223
Tumor
-0.2
362
Normal
-0.2
466
Normal
-0.2
741
Tumor
-0.2
211
Tumor
-0.2
724
Normal
-0.2
874
Normal
-0.2
744
Normal
-0.2
648
Normal
-0.2
446
Normal
-0.2
738
Normal
-0.2
777
Tumor
-0.2
474
Normal
-0.2
297
Tumor
-0.2
132
Normal
-0.2
141
Tumor
-0.2
911
Tumor
-0.2
258
Normal
-0.2
272
Normal
-0.2
814
Normal
-0.2
714
Normal
-0.2
414
Normal
-0.2
746
Normal
-0.2
298
Normal
-0.2
426
Normal
-0.2
955
Tumor
-0.2
188
Normal
-0.2
462
Normal
-0.2
172
Normal
-0.2
138
Normal
-0.2
818
Normal
-0.2
958
Normal
-0.2
342
Normal
-0.2
964
Normal
-0.2
222
Normal
-0.2
268
Normal
-0.2
983
Tumor
-0.2
881
Tumor
-0.2
451
Tumor
-0.2
464
Normal
-0.2
1021
Tumor
-0.2
396
Normal
-0.2
314
Normal
-0.3
353
Tumor
-0.3
366
Normal
-0.3
146
Normal
-0.3
728
Normal
-0.3
311
Tumor
-0.3
192
Normal
-0.3
136
Normal
-0.3
816
Normal
-0.3
391
Tumor
-0.3
331
Tumor
-0.3
312
Normal
-0.3
162
Normal
-0.3
723
Tumor
-0.3
666
Normal
-0.3
277
Tumor
-0.3
428
Normal
-0.3
482
Normal
-0.3
425
Tumor
-0.3
913
Tumor
-0.3
737
Tumor
-0.3
965
Tumor
-0.3
456
Normal
-0.3
424
Normal
-0.3
664
Normal
-0.3
617
Tumor
-0.3
884
Normal
-0.4
493
Tumor
-0.4
912
Normal
-0.4
125
Tumor
-0.4
271
Tumor
-0.4
351
Tumor
-0.4
663
Tumor
-0.4
217
Tumor
-0.4
975
Tumor
-0.5
877
Tumor
-0.5
661
Tumor
-0.5
221
Tumor
-0.5
497
Tumor
-0.5
743
Tumor
-0.5
943
Tumor
-0.5
131
Tumor
-0.5
517
Tumor
-0.5
283
Tumor
-0.6
343
Tumor
-0.6
921
Tumor
-0.6
463
Tumor
-0.6
413
Tumor
-0.7
817
Tumor
-0.7
671
Tumor
-0.7
967
Tumor
-0.7
545
Tumor
-0.8
917
Tumor
-1.4
918
Normal
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
