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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
73.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
47.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
42.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
40.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
36.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
33.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
27.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
26.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
26.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
20.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
19.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.4
1013
Tumor
1.1
411
Tumor
1.0
533
Tumor
1.0
953
Tumor
1.0
355
Tumor
0.9
497
Tumor
0.9
357
Tumor
0.7
351
Tumor
0.7
741
Tumor
0.7
695
Tumor
0.6
865
Tumor
0.6
425
Tumor
0.5
777
Tumor
0.5
523
Tumor
0.5
361
Tumor
0.5
427
Tumor
0.5
393
Tumor
0.5
161
Tumor
0.5
211
Tumor
0.5
313
Tumor
0.5
647
Tumor
0.5
213
Tumor
0.4
965
Tumor
0.4
977
Tumor
0.4
724
Normal
0.4
367
Tumor
0.4
943
Tumor
0.4
883
Tumor
0.4
573
Tumor
0.4
743
Tumor
0.4
663
Tumor
0.4
423
Tumor
0.4
487
Tumor
0.4
431
Tumor
0.4
1021
Tumor
0.4
983
Tumor
0.4
513
Tumor
0.4
537
Tumor
0.4
923
Tumor
0.4
385
Tumor
0.4
867
Tumor
0.4
567
Tumor
0.4
445
Tumor
0.4
283
Tumor
0.4
571
Tumor
0.3
635
Tumor
0.3
951
Tumor
0.3
545
Tumor
0.3
981
Tumor
0.3
661
Tumor
0.3
814
Normal
0.3
277
Tumor
0.3
465
Tumor
0.3
435
Tumor
0.3
257
Tumor
0.3
341
Tumor
0.3
1031
Tumor
0.3
463
Tumor
0.3
817
Tumor
0.3
491
Tumor
0.3
447
Tumor
0.3
861
Tumor
0.3
727
Tumor
0.3
125
Tumor
0.3
685
Tumor
0.2
785
Tumor
0.2
527
Tumor
0.2
815
Tumor
0.2
737
Tumor
0.2
483
Tumor
0.2
391
Tumor
0.2
1015
Tumor
0.2
147
Tumor
0.2
917
Tumor
0.2
443
Tumor
0.2
127
Tumor
0.2
227
Tumor
0.2
343
Tumor
0.2
383
Tumor
0.2
311
Tumor
0.2
665
Tumor
0.2
671
Tumor
0.2
413
Tumor
0.2
375
Tumor
0.2
1027
Tumor
0.1
955
Tumor
0.1
553
Tumor
0.1
455
Tumor
0.1
461
Tumor
0.1
515
Tumor
0.1
813
Tumor
0.1
297
Tumor
0.1
123
Tumor
0.1
433
Tumor
0.1
332
Normal
0.1
185
Tumor
0.1
271
Tumor
0.1
267
Tumor
0.1
877
Tumor
0.1
112
Tumor
0.1
535
Tumor
0.1
342
Normal
0.1
755
Tumor
0.1
975
Tumor
0.1
493
Tumor
0.1
141
Tumor
0.1
881
Tumor
0.1
217
Tumor
0.1
365
Tumor
0.1
221
Tumor
0.1
967
Tumor
0.1
863
Tumor
0.1
937
Tumor
0.1
467
Tumor
0.1
395
Tumor
0.0
697
Tumor
0.0
187
Tumor
0.0
171
Tumor
0.0
851
Tumor
0.0
873
Tumor
0.0
353
Tumor
0.0
386
Normal
0.0
672
Normal
0.0
525
Tumor
0.0
314
Normal
0.0
721
Tumor
0.0
434
Normal
0.0
113
Tumor
0.0
191
Tumor
0.0
498
Normal
0.0
131
Tumor
0.0
444
Normal
0.0
415
Tumor
0.0
978
Normal
0.0
477
Tumor
0.0
327
Tumor
0.0
354
Normal
0.0
192
Normal
0.0
823
Tumor
0.0
713
Tumor
0.0
666
Normal
0.0
963
Tumor
0.0
742
Normal
0.0
331
Tumor
0.0
984
Normal
0.0
352
Normal
0.0
884
Normal
0.0
285
Tumor
0.0
744
Normal
0.0
517
Tumor
0.0
358
Normal
0.0
278
Normal
0.0
1042
Normal
0.0
866
Normal
0.0
686
Normal
0.0
874
Normal
0.0
344
Normal
0.0
1041
Tumor
0.0
135
Tumor
-0.1
384
Normal
-0.1
388
Normal
-0.1
394
Normal
-0.1
857
Tumor
-0.1
615
Tumor
-0.1
298
Normal
-0.1
464
Normal
-0.1
921
Tumor
-0.1
258
Normal
-0.1
966
Normal
-0.1
232
Normal
-0.1
1014
Normal
-0.1
536
Normal
-0.1
662
Normal
-0.1
882
Normal
-0.1
563
Tumor
-0.1
195
Tumor
-0.1
488
Normal
-0.1
664
Normal
-0.1
492
Normal
-0.1
938
Normal
-0.1
862
Normal
-0.1
432
Normal
-0.1
494
Normal
-0.1
414
Normal
-0.1
954
Normal
-0.1
616
Normal
-0.1
534
Normal
-0.1
268
Normal
-0.1
1045
Tumor
-0.1
422
Normal
-0.1
913
Tumor
-0.1
968
Normal
-0.1
714
Normal
-0.1
916
Normal
-0.1
864
Normal
-0.1
915
Tumor
-0.1
514
Normal
-0.1
982
Normal
-0.1
312
Normal
-0.1
912
Normal
-0.1
964
Normal
-0.1
126
Normal
-0.1
944
Normal
-0.1
1032
Normal
-0.1
364
Normal
-0.1
636
Normal
-0.1
738
Normal
-0.1
911
Tumor
-0.1
262
Normal
-0.1
446
Normal
-0.1
648
Normal
-0.1
528
Normal
-0.1
396
Normal
-0.1
728
Normal
-0.1
148
Normal
-0.1
392
Normal
-0.1
436
Normal
-0.1
925
Tumor
-0.1
186
Normal
-0.1
412
Normal
-0.1
524
Normal
-0.1
1016
Normal
-0.1
188
Normal
-0.1
468
Normal
-0.1
416
Normal
-0.1
222
Normal
-0.1
426
Normal
-0.1
473
Tumor
-0.1
128
Normal
-0.1
196
Normal
-0.1
428
Normal
-0.2
138
Normal
-0.2
756
Normal
-0.2
328
Normal
-0.2
627
Tumor
-0.2
868
Normal
-0.2
124
Normal
-0.2
958
Normal
-0.2
261
Tumor
-0.2
564
Normal
-0.2
722
Normal
-0.2
786
Normal
-0.2
723
Tumor
-0.2
956
Normal
-0.2
716
Normal
-0.2
451
Tumor
-0.2
696
Normal
-0.2
922
Normal
-0.2
484
Normal
-0.2
926
Normal
-0.2
218
Normal
-0.2
878
Normal
-0.2
526
Normal
-0.2
482
Normal
-0.2
462
Normal
-0.2
466
Normal
-0.2
516
Normal
-0.2
924
Normal
-0.2
852
Normal
-0.2
1025
Tumor
-0.2
456
Normal
-0.2
818
Normal
-0.2
952
Normal
-0.2
1026
Normal
-0.2
518
Normal
-0.2
976
Normal
-0.2
546
Normal
-0.2
356
Normal
-0.2
231
Tumor
-0.2
114
Normal
-0.2
642
Normal
-0.2
272
Normal
-0.2
618
Normal
-0.2
858
Normal
-0.2
142
Normal
-0.2
617
Tumor
-0.2
162
Normal
-0.2
421
Tumor
-0.2
914
Normal
-0.2
572
Normal
-0.2
698
Normal
-0.2
424
Normal
-0.2
1046
Normal
-0.2
478
Normal
-0.2
212
Normal
-0.2
223
Tumor
-0.2
574
Normal
-0.2
1022
Normal
-0.2
145
Tumor
-0.2
824
Normal
-0.2
568
Normal
-0.2
746
Normal
-0.2
363
Tumor
-0.2
224
Normal
-0.2
452
Normal
-0.2
111
Normal
-0.2
778
Normal
-0.2
172
Normal
-0.2
628
Normal
-0.2
918
Normal
-0.2
538
Normal
-0.2
284
Normal
-0.2
641
Tumor
-0.2
481
Tumor
-0.2
1043
Tumor
-0.2
228
Normal
-0.3
558
Normal
-0.3
387
Tumor
-0.3
132
Normal
-0.3
146
Normal
-0.3
715
Tumor
-0.3
472
Normal
-0.3
136
Normal
-0.3
214
Normal
-0.3
368
Normal
-0.3
376
Normal
-0.3
286
Normal
-0.3
816
Normal
-0.3
1028
Normal
-0.3
448
Normal
-0.3
554
Normal
-0.3
1044
Normal
-0.3
366
Normal
-0.3
471
Tumor
-0.3
474
Normal
-0.4
362
Normal
-0.4
557
Tumor
-0.4
745
Tumor
-0.4
137
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
