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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX29 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX29 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
81.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
523
Tumor
1.0
123
Tumor
0.9
171
Tumor
0.9
473
Tumor
0.8
937
Tumor
0.8
537
Tumor
0.8
777
Tumor
0.8
1013
Tumor
0.8
527
Tumor
0.7
425
Tumor
0.7
745
Tumor
0.7
515
Tumor
0.7
261
Tumor
0.7
1025
Tumor
0.6
513
Tumor
0.6
951
Tumor
0.6
353
Tumor
0.6
483
Tumor
0.6
161
Tumor
0.6
137
Tumor
0.6
925
Tumor
0.6
557
Tumor
0.5
227
Tumor
0.5
913
Tumor
0.5
915
Tumor
0.5
545
Tumor
0.5
327
Tumor
0.5
1027
Tumor
0.5
635
Tumor
0.5
387
Tumor
0.5
431
Tumor
0.5
331
Tumor
0.5
923
Tumor
0.5
497
Tumor
0.5
967
Tumor
0.4
647
Tumor
0.4
881
Tumor
0.4
977
Tumor
0.4
277
Tumor
0.4
487
Tumor
0.4
533
Tumor
0.4
443
Tumor
0.4
867
Tumor
0.4
641
Tumor
0.4
313
Tumor
0.4
697
Tumor
0.4
493
Tumor
0.3
553
Tumor
0.3
571
Tumor
0.3
665
Tumor
0.3
1041
Tumor
0.3
461
Tumor
0.3
471
Tumor
0.3
455
Tumor
0.3
285
Tumor
0.3
231
Tumor
0.3
627
Tumor
0.3
755
Tumor
0.3
391
Tumor
0.3
463
Tumor
0.3
883
Tumor
0.3
963
Tumor
0.3
467
Tumor
0.3
615
Tumor
0.3
191
Tumor
0.3
221
Tumor
0.3
411
Tumor
0.3
477
Tumor
0.3
213
Tumor
0.3
365
Tumor
0.3
257
Tumor
0.3
297
Tumor
0.2
724
Normal
0.2
147
Tumor
0.2
943
Tumor
0.2
211
Tumor
0.2
131
Tumor
0.2
567
Tumor
0.2
427
Tumor
0.2
1031
Tumor
0.2
267
Tumor
0.2
393
Tumor
0.2
351
Tumor
0.2
975
Tumor
0.2
861
Tumor
0.2
517
Tumor
0.2
965
Tumor
0.2
363
Tumor
0.2
451
Tumor
0.2
911
Tumor
0.2
981
Tumor
0.2
383
Tumor
0.2
863
Tumor
0.2
385
Tumor
0.2
865
Tumor
0.2
481
Tumor
0.2
341
Tumor
0.1
817
Tumor
0.1
955
Tumor
0.1
1015
Tumor
0.1
715
Tumor
0.1
563
Tumor
0.1
873
Tumor
0.1
135
Tumor
0.1
271
Tumor
0.1
145
Tumor
0.1
395
Tumor
0.1
815
Tumor
0.1
141
Tumor
0.1
713
Tumor
0.1
573
Tumor
0.1
474
Normal
0.1
642
Normal
0.1
743
Tumor
0.1
661
Tumor
0.1
663
Tumor
0.1
851
Tumor
0.1
727
Tumor
0.1
465
Tumor
0.1
127
Tumor
0.1
823
Tumor
0.1
525
Tumor
0.1
953
Tumor
0.1
1028
Normal
0.1
671
Tumor
0.1
721
Tumor
0.0
558
Normal
0.0
223
Tumor
0.0
447
Tumor
0.0
185
Tumor
0.0
616
Normal
0.0
723
Tumor
0.0
737
Tumor
0.0
728
Normal
0.0
813
Tumor
0.0
526
Normal
0.0
415
Tumor
0.0
355
Tumor
0.0
421
Tumor
0.0
491
Tumor
0.0
286
Normal
0.0
413
Tumor
0.0
518
Normal
0.0
1022
Normal
0.0
1045
Tumor
0.0
714
Normal
0.0
361
Tumor
0.0
195
Tumor
0.0
357
Tumor
0.0
628
Normal
0.0
964
Normal
0.0
428
Normal
0.0
1042
Normal
0.0
433
Tumor
0.0
258
Normal
0.0
944
Normal
0.0
916
Normal
-0.1
514
Normal
-0.1
968
Normal
-0.1
918
Normal
-0.1
546
Normal
-0.1
528
Normal
-0.1
113
Tumor
-0.1
956
Normal
-0.1
284
Normal
-0.1
914
Normal
-0.1
696
Normal
-0.1
283
Tumor
-0.1
534
Normal
-0.1
814
Normal
-0.1
1026
Normal
-0.1
978
Normal
-0.1
924
Normal
-0.1
472
Normal
-0.1
966
Normal
-0.1
426
Normal
-0.1
852
Normal
-0.1
786
Normal
-0.1
921
Tumor
-0.1
484
Normal
-0.1
554
Normal
-0.1
422
Normal
-0.1
262
Normal
-0.1
983
Tumor
-0.1
564
Normal
-0.1
572
Normal
-0.1
328
Normal
-0.1
618
Normal
-0.1
468
Normal
-0.1
857
Tumor
-0.1
816
Normal
-0.1
423
Tumor
-0.1
957
Tumor
-0.1
212
Normal
-0.1
617
Tumor
-0.1
535
Tumor
-0.1
874
Normal
-0.1
922
Normal
-0.1
866
Normal
-0.1
466
Normal
-0.1
1014
Normal
-0.1
722
Normal
-0.1
636
Normal
-0.1
746
Normal
-0.1
482
Normal
-0.1
424
Normal
-0.1
568
Normal
-0.1
232
Normal
-0.1
648
Normal
-0.1
111
Normal
-0.1
1016
Normal
-0.1
492
Normal
-0.1
538
Normal
-0.1
356
Normal
-0.1
414
Normal
-0.1
412
Normal
-0.1
1046
Normal
-0.1
218
Normal
-0.1
217
Tumor
-0.1
311
Tumor
-0.1
462
Normal
-0.1
464
Normal
-0.1
436
Normal
-0.1
228
Normal
-0.1
926
Normal
-0.1
1044
Normal
-0.1
478
Normal
-0.1
884
Normal
-0.1
456
Normal
-0.1
666
Normal
-0.1
278
Normal
-0.2
574
Normal
-0.2
664
Normal
-0.2
488
Normal
-0.2
756
Normal
-0.2
1032
Normal
-0.2
1021
Tumor
-0.2
912
Normal
-0.2
448
Normal
-0.2
778
Normal
-0.2
868
Normal
-0.2
222
Normal
-0.2
494
Normal
-0.2
686
Normal
-0.2
268
Normal
-0.2
524
Normal
-0.2
976
Normal
-0.2
452
Normal
-0.2
128
Normal
-0.2
312
Normal
-0.2
298
Normal
-0.2
952
Normal
-0.2
742
Normal
-0.2
126
Normal
-0.2
272
Normal
-0.2
862
Normal
-0.2
698
Normal
-0.2
716
Normal
-0.2
362
Normal
-0.2
824
Normal
-0.2
516
Normal
-0.2
864
Normal
-0.2
114
Normal
-0.2
982
Normal
-0.2
434
Normal
-0.2
332
Normal
-0.2
136
Normal
-0.2
958
Normal
-0.2
148
Normal
-0.2
343
Tumor
-0.2
741
Tumor
-0.2
314
Normal
-0.2
446
Normal
-0.2
172
Normal
-0.2
162
Normal
-0.2
416
Normal
-0.2
364
Normal
-0.2
445
Tumor
-0.2
672
Normal
-0.2
444
Normal
-0.2
954
Normal
-0.2
224
Normal
-0.2
536
Normal
-0.2
882
Normal
-0.2
124
Normal
-0.2
132
Normal
-0.2
938
Normal
-0.2
432
Normal
-0.2
396
Normal
-0.2
214
Normal
-0.2
344
Normal
-0.3
386
Normal
-0.3
388
Normal
-0.3
662
Normal
-0.3
818
Normal
-0.3
858
Normal
-0.3
498
Normal
-0.3
138
Normal
-0.3
392
Normal
-0.3
196
Normal
-0.3
358
Normal
-0.3
342
Normal
-0.3
375
Tumor
-0.3
142
Normal
-0.3
366
Normal
-0.3
984
Normal
-0.3
917
Tumor
-0.3
352
Normal
-0.3
744
Normal
-0.3
878
Normal
-0.3
384
Normal
-0.3
376
Normal
-0.3
354
Normal
-0.3
785
Tumor
-0.3
394
Normal
-0.3
125
Tumor
-0.3
738
Normal
-0.4
685
Tumor
-0.4
1043
Tumor
-0.4
186
Normal
-0.4
368
Normal
-0.4
695
Tumor
-0.4
112
Tumor
-0.4
192
Normal
-0.4
435
Tumor
-0.5
146
Normal
-0.5
367
Tumor
-0.5
877
Tumor
-0.6
187
Tumor
-0.7
188
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
