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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PKM is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
98.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2276.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1646.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
951.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
919.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
911.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
887.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
845.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
807.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
774.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
736.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
733.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
725.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
719.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
673.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
672.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
580.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
565.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
528.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
457.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
421.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
414.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
383.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
367.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
358.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
341.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
316.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
286.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
283.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
276.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
264.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
238.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
233.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
230.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
223.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
200.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
197.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
197.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
196.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
183.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
177.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
176.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
164.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
163.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
162.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
161.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
160.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
158.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
157.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
156.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
139.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
132.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
132.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
130.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
125.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
120.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
118.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
117.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
115.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
113.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
109.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
109.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
109.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
107.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
106.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
105.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
104.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
99.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
95.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
94.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
93.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
92.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
91.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
89.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
89.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
89.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
88.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
87.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
84.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
83.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
81.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
81.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
78.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
78.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
78.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
78.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
75.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
75.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
74.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
72.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
72.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
72.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
72.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
71.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
70.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
69.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
69.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
69.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
69.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
68.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
68.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
68.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
66.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
66.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
66.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
66.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
64.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
64.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
60.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
60.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
60.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
59.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
59.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
59.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
58.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
58.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
57.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
56.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
55.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
53.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
52.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
52.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
52.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
52.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
52.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
51.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
50.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
50.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
49.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
47.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
43.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
40.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
40.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
38.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
35.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
33.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
33.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
31.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
27.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
26.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
22.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
21.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
18.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
2.0
283
Tumor
1.7
125
Tumor
1.6
917
Tumor
1.6
343
Tumor
1.5
211
Tumor
1.4
661
Tumor
1.3
385
Tumor
1.2
375
Tumor
1.1
877
Tumor
1.0
813
Tumor
1.0
573
Tumor
1.0
313
Tumor
1.0
257
Tumor
1.0
1027
Tumor
1.0
535
Tumor
0.8
447
Tumor
0.8
427
Tumor
0.8
455
Tumor
0.8
953
Tumor
0.8
983
Tumor
0.8
545
Tumor
0.7
567
Tumor
0.7
523
Tumor
0.7
713
Tumor
0.7
745
Tumor
0.6
285
Tumor
0.6
815
Tumor
0.6
671
Tumor
0.6
724
Normal
0.5
355
Tumor
0.5
943
Tumor
0.5
491
Tumor
0.5
213
Tumor
0.5
814
Normal
0.5
743
Tumor
0.5
536
Normal
0.5
478
Normal
0.5
192
Normal
0.4
331
Tumor
0.4
367
Tumor
0.4
697
Tumor
0.4
383
Tumor
0.4
851
Tumor
0.4
391
Tumor
0.4
351
Tumor
0.4
297
Tumor
0.4
492
Normal
0.3
685
Tumor
0.3
434
Normal
0.3
217
Tumor
0.3
141
Tumor
0.3
527
Tumor
0.3
823
Tumor
0.3
727
Tumor
0.3
444
Normal
0.3
957
Tumor
0.3
923
Tumor
0.3
537
Tumor
0.2
963
Tumor
0.2
524
Normal
0.2
395
Tumor
0.2
135
Tumor
0.2
517
Tumor
0.2
916
Normal
0.2
498
Normal
0.2
966
Normal
0.2
538
Normal
0.2
737
Tumor
0.2
185
Tumor
0.2
817
Tumor
0.2
224
Normal
0.2
268
Normal
0.1
161
Tumor
0.1
421
Tumor
0.1
195
Tumor
0.1
188
Normal
0.1
1043
Tumor
0.1
525
Tumor
0.1
467
Tumor
0.1
433
Tumor
0.1
126
Normal
0.1
387
Tumor
0.1
715
Tumor
0.0
663
Tumor
0.0
357
Tumor
0.0
187
Tumor
0.0
312
Normal
0.0
393
Tumor
0.0
463
Tumor
0.0
191
Tumor
0.0
262
Normal
0.0
146
Normal
0.0
451
Tumor
0.0
951
Tumor
0.0
365
Tumor
0.0
461
Tumor
0.0
386
Normal
0.0
978
Normal
0.0
881
Tumor
0.0
131
Tumor
0.0
223
Tumor
0.0
721
Tumor
0.0
861
Tumor
0.0
1013
Tumor
0.0
413
Tumor
0.0
493
Tumor
0.0
284
Normal
-0.1
975
Tumor
-0.1
363
Tumor
-0.1
384
Normal
-0.1
145
Tumor
-0.1
563
Tumor
-0.1
124
Normal
-0.1
516
Normal
-0.1
425
Tumor
-0.1
137
Tumor
-0.1
483
Tumor
-0.1
1031
Tumor
-0.1
138
Normal
-0.1
227
Tumor
-0.1
976
Normal
-0.1
212
Normal
-0.2
415
Tumor
-0.2
332
Normal
-0.2
958
Normal
-0.2
487
Tumor
-0.2
366
Normal
-0.2
857
Tumor
-0.2
852
Normal
-0.2
497
Tumor
-0.2
228
Normal
-0.2
394
Normal
-0.2
1015
Tumor
-0.2
344
Normal
-0.2
954
Normal
-0.2
272
Normal
-0.2
1044
Normal
-0.2
396
Normal
-0.2
883
Tumor
-0.3
816
Normal
-0.3
278
Normal
-0.3
874
Normal
-0.3
362
Normal
-0.3
327
Tumor
-0.3
662
Normal
-0.3
314
Normal
-0.3
368
Normal
-0.3
984
Normal
-0.3
352
Normal
-0.3
982
Normal
-0.3
755
Tumor
-0.3
328
Normal
-0.3
716
Normal
-0.3
1042
Normal
-0.3
443
Tumor
-0.3
494
Normal
-0.3
571
Tumor
-0.3
558
Normal
-0.3
218
Normal
-0.3
298
Normal
-0.3
364
Normal
-0.3
471
Tumor
-0.3
392
Normal
-0.3
388
Normal
-0.3
778
Normal
-0.3
924
Normal
-0.3
952
Normal
-0.3
468
Normal
-0.3
744
Normal
-0.3
1016
Normal
-0.3
277
Tumor
-0.3
574
Normal
-0.4
672
Normal
-0.4
214
Normal
-0.4
136
Normal
-0.4
432
Normal
-0.4
914
Normal
-0.4
785
Tumor
-0.4
922
Normal
-0.4
968
Normal
-0.4
918
Normal
-0.4
863
Tumor
-0.4
1028
Normal
-0.4
354
Normal
-0.4
411
Tumor
-0.4
448
Normal
-0.4
926
Normal
-0.4
114
Normal
-0.4
424
Normal
-0.4
938
Normal
-0.4
488
Normal
-0.4
1021
Tumor
-0.4
416
Normal
-0.4
956
Normal
-0.4
686
Normal
-0.4
142
Normal
-0.4
474
Normal
-0.4
528
Normal
-0.4
665
Tumor
-0.4
428
Normal
-0.4
286
Normal
-0.4
171
Tumor
-0.4
546
Normal
-0.4
1045
Tumor
-0.4
261
Tumor
-0.4
1032
Normal
-0.4
884
Normal
-0.4
342
Normal
-0.4
664
Normal
-0.5
635
Tumor
-0.5
858
Normal
-0.5
111
Normal
-0.5
722
Normal
-0.5
518
Normal
-0.5
967
Tumor
-0.5
412
Normal
-0.5
615
Tumor
-0.5
738
Normal
-0.5
882
Normal
-0.5
921
Tumor
-0.5
1026
Normal
-0.5
873
Tumor
-0.5
422
Normal
-0.5
196
Normal
-0.5
868
Normal
-0.5
818
Normal
-0.5
666
Normal
-0.5
696
Normal
-0.5
258
Normal
-0.5
572
Normal
-0.5
466
Normal
-0.5
913
Tumor
-0.5
878
Normal
-0.5
446
Normal
-0.5
777
Tumor
-0.5
1046
Normal
-0.5
628
Normal
-0.5
376
Normal
-0.5
472
Normal
-0.5
627
Tumor
-0.5
514
Normal
-0.5
456
Normal
-0.5
554
Normal
-0.5
915
Tumor
-0.5
1025
Tumor
-0.5
162
Normal
-0.5
786
Normal
-0.6
414
Normal
-0.6
132
Normal
-0.6
867
Tumor
-0.6
925
Tumor
-0.6
172
Normal
-0.6
423
Tumor
-0.6
756
Normal
-0.6
445
Tumor
-0.6
964
Normal
-0.6
361
Tumor
-0.6
464
Normal
-0.6
564
Normal
-0.6
534
Normal
-0.6
865
Tumor
-0.6
232
Normal
-0.6
1022
Normal
-0.6
452
Normal
-0.6
222
Normal
-0.6
356
Normal
-0.6
1014
Normal
-0.6
186
Normal
-0.6
148
Normal
-0.6
698
Normal
-0.6
742
Normal
-0.6
358
Normal
-0.6
824
Normal
-0.6
944
Normal
-0.6
728
Normal
-0.6
617
Tumor
-0.6
231
Tumor
-0.6
113
Tumor
-0.6
714
Normal
-0.6
147
Tumor
-0.6
462
Normal
-0.6
526
Normal
-0.7
866
Normal
-0.7
955
Tumor
-0.7
128
Normal
-0.7
647
Tumor
-0.7
723
Tumor
-0.7
648
Normal
-0.7
426
Normal
-0.7
912
Normal
-0.7
341
Tumor
-0.7
127
Tumor
-0.7
862
Normal
-0.7
484
Normal
-0.7
353
Tumor
-0.7
642
Normal
-0.7
482
Normal
-0.7
515
Tumor
-0.7
965
Tumor
-0.7
568
Normal
-0.7
864
Normal
-0.8
616
Normal
-0.8
746
Normal
-0.8
641
Tumor
-0.8
741
Tumor
-0.8
436
Normal
-0.8
937
Tumor
-0.8
636
Normal
-0.8
557
Tumor
-0.8
618
Normal
-0.8
553
Tumor
-0.9
977
Tumor
-0.9
431
Tumor
-0.9
221
Tumor
-0.9
513
Tumor
-0.9
695
Tumor
-0.9
123
Tumor
-0.9
271
Tumor
-0.9
435
Tumor
-1.0
112
Tumor
-1.0
481
Tumor
-1.0
267
Tumor
-1.0
1041
Tumor
-1.0
477
Tumor
-1.1
911
Tumor
-1.1
533
Tumor
-1.1
465
Tumor
-1.1
981
Tumor
-1.2
473
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
