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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
407.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
318.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
312.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
271.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
271.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
259.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
250.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
245.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
243.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
235.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
224.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
218.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
217.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
212.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
206.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
204.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
203.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
199.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
198.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
197.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
194.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
191.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
189.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
181.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
179.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
176.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
175.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
173.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
169.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
168.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
168.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
168.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
165.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
162.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
161.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
160.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
160.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
158.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
157.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
157.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
156.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
155.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
153.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
153.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
153.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
151.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
151.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
150.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
150.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
148.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
147.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
146.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
146.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
145.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
145.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
144.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
142.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
141.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
140.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
140.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
137.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
136.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
135.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
134.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
134.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
134.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
132.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
130.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
126.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
125.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
122.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
121.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
120.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
119.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
119.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
117.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
115.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
114.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
114.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
114.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
113.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
113.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
112.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
112.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
111.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
111.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
110.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
108.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
108.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
108.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
108.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
108.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
107.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
107.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
107.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
106.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
106.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
105.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
105.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
105.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
104.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
104.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
104.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
104.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
103.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
103.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
102.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
101.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
101.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
101.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
101.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
100.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
100.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
99.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
99.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
99.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
98.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
98.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
97.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
96.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
96.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
96.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
95.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
94.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
94.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
93.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
93.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
92.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
92.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
92.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
92.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
92.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
92.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
91.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
91.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
90.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
90.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
89.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
88.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
88.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
87.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
87.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
87.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
87.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
86.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
85.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
85.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
85.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
84.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
84.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
84.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
84.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
84.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
83.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
83.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
82.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
82.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
82.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
81.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
81.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
81.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
80.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
80.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
79.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
79.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
79.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
78.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
78.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
77.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
77.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
76.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
76.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
76.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
76.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
76.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
75.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
75.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
75.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
75.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
75.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
75.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
74.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
74.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
74.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
73.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
73.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
73.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
73.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
72.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
72.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
72.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
72.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
72.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
71.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
71.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
71.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
71.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
71.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
71.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
71.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
71.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
71.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
70.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
70.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
70.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
70.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
70.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
69.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
69.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
69.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
69.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
68.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
68.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
68.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
68.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
66.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
66.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
66.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
66.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
66.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
65.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
64.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
64.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
64.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
64.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
63.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
63.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
62.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
62.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
62.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
62.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
62.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
61.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
61.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
61.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
61.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
61.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
61.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
61.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
61.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
60.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
60.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
58.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
58.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
57.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
57.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
57.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
57.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
56.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
56.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
56.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
55.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
55.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
55.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
54.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
54.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
53.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
53.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
52.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
52.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
52.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
51.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
50.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
50.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
50.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
49.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
49.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
49.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
48.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
48.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
47.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
46.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
46.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
46.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
46.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
46.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
45.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
44.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
42.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
42.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
40.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
40.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
39.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
39.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
38.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
36.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
35.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
35.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
35.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
35.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
34.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
33.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
30.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
23.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
117.6
Number of samples
231
Samples
Sample
Description
TPM
DO45239
0 years, male, NA, stage:2, alive, 870 days
462.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
384.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
371.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
351.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
350.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
335.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
319.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
313.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
305.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
300.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
297.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
291.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
271.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
262.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
261.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
252.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
250.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
247.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
245.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
224.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
222.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
216.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
212.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
212.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
210.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
209.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
204.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
197.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
195.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
189.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
189.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
189.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
188.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
188.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
188.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
185.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
182.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
181.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
180.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
178.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
174.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
174.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
172.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
165.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
161.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
160.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
158.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
157.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
157.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
154.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
151.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
149.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
148.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
146.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
144.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
144.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
143.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
141.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
139.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
139.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
137.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
136.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
136.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
136.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
134.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
133.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
131.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
131.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
130.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
128.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
125.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
122.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
122.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
122.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
121.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
119.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
118.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
118.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
117.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
117.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
117.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
115.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
114.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
114.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
113.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
111.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
111.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
111.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
111.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
110.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
109.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
109.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
109.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
108.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
108.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
108.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
106.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
106.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
105.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
105.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
104.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
104.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
103.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
102.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
100.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
100.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
99.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
99.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
98.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
97.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
97.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
95.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
95.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
94.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
94.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
93.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
93.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
93.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
93.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
91.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
90.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
90.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
88.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
87.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
87.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
87.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
86.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
86.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
86.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
86.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
86.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
86.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
85.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
85.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
85.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
84.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
84.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
82.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
82.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
82.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
82.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
82.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
81.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
81.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
81.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
81.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
80.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
80.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
79.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
79.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
78.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
78.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
78.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
77.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
77.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
77.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
77.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
77.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
76.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
76.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
75.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
74.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
74.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
74.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
73.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
73.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
73.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
73.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
73.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
72.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
72.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
71.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
70.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
69.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
69.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
68.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
68.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
68.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
68.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
66.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
65.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
65.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
64.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
63.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
63.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
62.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
61.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
60.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
58.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
57.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
57.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
57.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
56.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
56.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
55.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
55.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
55.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
54.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
54.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
54.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
53.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
53.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
53.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
52.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
51.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
51.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
51.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
50.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
50.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
50.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
49.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
44.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
44.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
43.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
40.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
30.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.2
1025
Tumor
0.9
135
Tumor
0.8
877
Tumor
0.8
185
Tumor
0.7
231
Tumor
0.6
445
Tumor
0.5
617
Tumor
0.5
421
Tumor
0.5
267
Tumor
0.5
715
Tumor
0.5
641
Tumor
0.4
443
Tumor
0.4
467
Tumor
0.4
223
Tumor
0.4
851
Tumor
0.4
461
Tumor
0.3
1043
Tumor
0.3
353
Tumor
0.3
187
Tumor
0.3
433
Tumor
0.3
515
Tumor
0.3
737
Tumor
0.3
257
Tumor
0.3
416
Normal
0.3
917
Tumor
0.2
113
Tumor
0.2
341
Tumor
0.2
147
Tumor
0.2
351
Tumor
0.2
435
Tumor
0.2
912
Normal
0.2
428
Normal
0.2
745
Tumor
0.2
883
Tumor
0.2
363
Tumor
0.2
462
Normal
0.1
137
Tumor
0.1
567
Tumor
0.1
327
Tumor
0.1
284
Normal
0.1
232
Normal
0.1
298
Normal
0.1
191
Tumor
0.1
863
Tumor
0.1
497
Tumor
0.1
627
Tumor
0.1
148
Normal
0.1
261
Tumor
0.1
424
Normal
0.1
964
Normal
0.1
414
Normal
0.1
395
Tumor
0.1
951
Tumor
0.1
983
Tumor
0.1
375
Tumor
0.1
112
Tumor
0.1
432
Normal
0.1
852
Normal
0.1
482
Normal
0.1
824
Normal
0.1
145
Tumor
0.1
574
Normal
0.1
786
Normal
0.1
615
Tumor
0.1
868
Normal
0.1
884
Normal
0.1
558
Normal
0.0
455
Tumor
0.0
286
Normal
0.0
328
Normal
0.0
412
Normal
0.0
628
Normal
0.0
111
Normal
0.0
268
Normal
0.0
636
Normal
0.0
278
Normal
0.0
697
Tumor
0.0
518
Normal
0.0
212
Normal
0.0
262
Normal
0.0
314
Normal
0.0
671
Tumor
0.0
472
Normal
0.0
456
Normal
0.0
285
Tumor
0.0
172
Normal
0.0
224
Normal
0.0
228
Normal
0.0
136
Normal
0.0
162
Normal
0.0
385
Tumor
0.0
492
Normal
0.0
365
Tumor
0.0
272
Normal
0.0
258
Normal
0.0
642
Normal
0.0
186
Normal
0.0
618
Normal
0.0
572
Normal
0.0
728
Normal
0.0
537
Tumor
0.0
464
Normal
0.0
963
Tumor
0.0
817
Tumor
0.0
514
Normal
0.0
387
Tumor
0.0
524
Normal
0.0
481
Tumor
0.0
171
Tumor
0.0
616
Normal
0.0
882
Normal
0.0
436
Normal
0.0
738
Normal
0.0
188
Normal
0.0
546
Normal
0.0
422
Normal
0.0
568
Normal
0.0
554
Normal
0.0
128
Normal
0.0
665
Tumor
0.0
534
Normal
0.0
526
Normal
0.0
818
Normal
0.0
356
Normal
0.0
785
Tumor
0.0
742
Normal
0.0
967
Tumor
0.0
483
Tumor
0.0
146
Normal
0.0
564
Normal
0.0
816
Normal
0.0
966
Normal
0.0
937
Tumor
0.0
474
Normal
0.0
864
Normal
0.0
332
Normal
-0.1
778
Normal
-0.1
364
Normal
-0.1
471
Tumor
-0.1
142
Normal
-0.1
866
Normal
-0.1
648
Normal
-0.1
756
Normal
-0.1
878
Normal
-0.1
358
Normal
-0.1
127
Tumor
-0.1
466
Normal
-0.1
1015
Tumor
-0.1
823
Tumor
-0.1
914
Normal
-0.1
484
Normal
-0.1
1045
Tumor
-0.1
952
Normal
-0.1
874
Normal
-0.1
392
Normal
-0.1
955
Tumor
-0.1
386
Normal
-0.1
513
Tumor
-0.1
494
Normal
-0.1
528
Normal
-0.1
723
Tumor
-0.1
1016
Normal
-0.1
926
Normal
-0.1
664
Normal
-0.1
746
Normal
-0.1
362
Normal
-0.1
858
Normal
-0.1
1026
Normal
-0.1
411
Tumor
-0.1
968
Normal
-0.1
944
Normal
-0.1
536
Normal
-0.1
114
Normal
-0.1
312
Normal
-0.1
138
Normal
-0.1
978
Normal
-0.1
451
Tumor
-0.1
662
Normal
-0.1
434
Normal
-0.1
535
Tumor
-0.1
516
Normal
-0.2
132
Normal
-0.2
352
Normal
-0.2
925
Tumor
-0.2
214
Normal
-0.2
447
Tumor
-0.2
727
Tumor
-0.2
982
Normal
-0.2
448
Normal
-0.2
126
Normal
-0.2
956
Normal
-0.2
981
Tumor
-0.2
388
Normal
-0.2
1046
Normal
-0.2
217
Tumor
-0.2
635
Tumor
-0.2
814
Normal
-0.2
196
Normal
-0.2
426
Normal
-0.2
724
Normal
-0.2
958
Normal
-0.2
685
Tumor
-0.2
938
Normal
-0.2
533
Tumor
-0.2
297
Tumor
-0.2
367
Tumor
-0.2
714
Normal
-0.2
478
Normal
-0.2
865
Tumor
-0.2
666
Normal
-0.2
661
Tumor
-0.2
713
Tumor
-0.2
222
Normal
-0.2
913
Tumor
-0.2
1042
Normal
-0.2
415
Tumor
-0.2
976
Normal
-0.2
452
Normal
-0.2
857
Tumor
-0.2
311
Tumor
-0.2
862
Normal
-0.2
493
Tumor
-0.2
943
Tumor
-0.2
427
Tumor
-0.2
1022
Normal
-0.2
916
Normal
-0.2
354
Normal
-0.2
984
Normal
-0.2
342
Normal
-0.2
161
Tumor
-0.2
527
Tumor
-0.2
918
Normal
-0.2
468
Normal
-0.2
813
Tumor
-0.2
444
Normal
-0.2
141
Tumor
-0.2
283
Tumor
-0.2
125
Tumor
-0.3
696
Normal
-0.3
686
Normal
-0.3
192
Normal
-0.3
396
Normal
-0.3
394
Normal
-0.3
721
Tumor
-0.3
218
Normal
-0.3
1014
Normal
-0.3
498
Normal
-0.3
663
Tumor
-0.3
344
Normal
-0.3
563
Tumor
-0.3
722
Normal
-0.3
924
Normal
-0.3
815
Tumor
-0.3
571
Tumor
-0.3
488
Normal
-0.3
195
Tumor
-0.3
861
Tumor
-0.3
211
Tumor
-0.3
954
Normal
-0.3
716
Normal
-0.3
881
Tumor
-0.3
423
Tumor
-0.3
911
Tumor
-0.3
355
Tumor
-0.3
965
Tumor
-0.3
755
Tumor
-0.3
698
Normal
-0.3
975
Tumor
-0.3
517
Tumor
-0.3
1044
Normal
-0.3
523
Tumor
-0.3
343
Tumor
-0.3
463
Tumor
-0.3
538
Normal
-0.3
376
Normal
-0.3
361
Tumor
-0.3
446
Normal
-0.4
873
Tumor
-0.4
124
Normal
-0.4
331
Tumor
-0.4
413
Tumor
-0.4
923
Tumor
-0.4
393
Tumor
-0.4
957
Tumor
-0.4
672
Normal
-0.4
271
Tumor
-0.4
922
Normal
-0.4
357
Tumor
-0.4
1041
Tumor
-0.4
313
Tumor
-0.4
744
Normal
-0.4
867
Tumor
-0.4
977
Tumor
-0.4
1028
Normal
-0.4
743
Tumor
-0.4
477
Tumor
-0.4
384
Normal
-0.5
131
Tumor
-0.5
1032
Normal
-0.5
525
Tumor
-0.5
366
Normal
-0.5
221
Tumor
-0.5
545
Tumor
-0.5
391
Tumor
-0.5
491
Tumor
-0.5
213
Tumor
-0.5
277
Tumor
-0.5
368
Normal
-0.6
573
Tumor
-0.6
123
Tumor
-0.6
425
Tumor
-0.6
473
Tumor
-0.6
1021
Tumor
-0.6
465
Tumor
-0.6
777
Tumor
-0.6
915
Tumor
-0.6
487
Tumor
-0.6
553
Tumor
-0.6
921
Tumor
-0.7
741
Tumor
-0.7
1031
Tumor
-0.7
431
Tumor
-0.8
1013
Tumor
-0.8
695
Tumor
-0.8
953
Tumor
-0.8
1027
Tumor
-0.8
227
Tumor
-0.8
383
Tumor
-0.9
647
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
