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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX3Y is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
72.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
31.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
27.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DDX3Y is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
89.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
46.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
37.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
32.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
31.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
23.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
171
Tumor
0.9
661
Tumor
0.8
983
Tumor
0.7
937
Tumor
0.6
727
Tumor
0.6
351
Tumor
0.6
285
Tumor
0.5
537
Tumor
0.5
125
Tumor
0.5
557
Tumor
0.5
367
Tumor
0.4
123
Tumor
0.4
567
Tumor
0.4
865
Tumor
0.4
443
Tumor
0.4
473
Tumor
0.4
131
Tumor
0.4
527
Tumor
0.4
427
Tumor
0.4
573
Tumor
0.4
523
Tumor
0.4
953
Tumor
0.4
533
Tumor
0.4
943
Tumor
0.3
1013
Tumor
0.3
951
Tumor
0.3
724
Normal
0.3
161
Tumor
0.3
211
Tumor
0.3
463
Tumor
0.3
387
Tumor
0.3
671
Tumor
0.3
861
Tumor
0.3
395
Tumor
0.3
135
Tumor
0.3
851
Tumor
0.3
283
Tumor
0.3
491
Tumor
0.3
413
Tumor
0.3
745
Tumor
0.3
817
Tumor
0.3
385
Tumor
0.3
137
Tumor
0.3
147
Tumor
0.3
1041
Tumor
0.2
925
Tumor
0.2
535
Tumor
0.2
715
Tumor
0.2
1025
Tumor
0.2
957
Tumor
0.2
113
Tumor
0.2
231
Tumor
0.2
497
Tumor
0.2
112
Tumor
0.2
355
Tumor
0.2
1015
Tumor
0.2
823
Tumor
0.2
777
Tumor
0.2
697
Tumor
0.2
467
Tumor
0.2
977
Tumor
0.2
267
Tumor
0.2
383
Tumor
0.2
421
Tumor
0.2
451
Tumor
0.2
213
Tumor
0.2
545
Tumor
0.2
435
Tumor
0.2
1027
Tumor
0.2
525
Tumor
0.2
313
Tumor
0.2
311
Tumor
0.2
967
Tumor
0.1
685
Tumor
0.1
515
Tumor
0.1
877
Tumor
0.1
187
Tumor
0.1
647
Tumor
0.1
145
Tumor
0.1
425
Tumor
0.1
1021
Tumor
0.1
141
Tumor
0.1
785
Tumor
0.1
375
Tumor
0.1
447
Tumor
0.1
261
Tumor
0.1
411
Tumor
0.1
393
Tumor
0.1
713
Tumor
0.1
881
Tumor
0.1
127
Tumor
0.1
963
Tumor
0.1
431
Tumor
0.1
975
Tumor
0.1
493
Tumor
0.1
917
Tumor
0.1
1043
Tumor
0.1
353
Tumor
0.1
815
Tumor
0.1
513
Tumor
0.1
923
Tumor
0.1
423
Tumor
0.1
981
Tumor
0.1
191
Tumor
0.1
536
Normal
0.1
1028
Normal
0.1
553
Tumor
0.1
195
Tumor
0.1
471
Tumor
0.1
363
Tumor
0.1
571
Tumor
0.0
524
Normal
0.0
518
Normal
0.0
568
Normal
0.0
966
Normal
0.0
461
Tumor
0.0
978
Normal
0.0
257
Tumor
0.0
286
Normal
0.0
737
Tumor
0.0
422
Normal
0.0
968
Normal
0.0
221
Tumor
0.0
627
Tumor
0.0
327
Tumor
0.0
954
Normal
0.0
915
Tumor
0.0
1031
Tumor
0.0
955
Tumor
0.0
944
Normal
0.0
331
Tumor
0.0
554
Normal
0.0
526
Normal
0.0
124
Normal
0.0
492
Normal
0.0
474
Normal
0.0
755
Tumor
0.0
428
Normal
0.0
436
Normal
0.0
528
Normal
0.0
663
Tumor
0.0
228
Normal
0.0
217
Tumor
0.0
864
Normal
0.0
916
Normal
0.0
284
Normal
0.0
433
Tumor
0.0
472
Normal
0.0
628
Normal
0.0
814
Normal
0.0
558
Normal
0.0
883
Tumor
0.0
212
Normal
0.0
696
Normal
0.0
448
Normal
-0.1
465
Tumor
-0.1
617
Tumor
-0.1
786
Normal
-0.1
484
Normal
-0.1
227
Tumor
-0.1
938
Normal
-0.1
756
Normal
-0.1
114
Normal
-0.1
412
Normal
-0.1
232
Normal
-0.1
728
Normal
-0.1
912
Normal
-0.1
1026
Normal
-0.1
444
Normal
-0.1
956
Normal
-0.1
514
Normal
-0.1
878
Normal
-0.1
572
Normal
-0.1
867
Tumor
-0.1
482
Normal
-0.1
982
Normal
-0.1
368
Normal
-0.1
391
Tumor
-0.1
852
Normal
-0.1
432
Normal
-0.1
926
Normal
-0.1
272
Normal
-0.1
635
Tumor
-0.1
636
Normal
-0.1
487
Tumor
-0.1
277
Tumor
-0.1
882
Normal
-0.1
984
Normal
-0.1
873
Tumor
-0.1
913
Tumor
-0.1
414
Normal
-0.1
1032
Normal
-0.1
952
Normal
-0.1
365
Tumor
-0.1
352
Normal
-0.1
824
Normal
-0.1
138
Normal
-0.1
918
Normal
-0.1
262
Normal
-0.1
415
Tumor
-0.1
111
Normal
-0.1
857
Tumor
-0.1
1014
Normal
-0.1
328
Normal
-0.1
468
Normal
-0.1
498
Normal
-0.1
1016
Normal
-0.1
964
Normal
-0.1
222
Normal
-0.1
136
Normal
-0.1
481
Tumor
-0.1
494
Normal
-0.1
462
Normal
-0.1
218
Normal
-0.1
142
Normal
-0.1
863
Tumor
-0.1
128
Normal
-0.1
446
Normal
-0.1
477
Tumor
-0.1
185
Tumor
-0.1
884
Normal
-0.1
297
Tumor
-0.1
356
Normal
-0.1
312
Normal
-0.1
1022
Normal
-0.1
664
Normal
-0.1
648
Normal
-0.1
914
Normal
-0.1
716
Normal
-0.1
1046
Normal
-0.1
958
Normal
-0.1
911
Tumor
-0.1
271
Tumor
-0.1
976
Normal
-0.1
574
Normal
-0.1
816
Normal
-0.1
546
Normal
-0.1
721
Tumor
-0.1
564
Normal
-0.1
224
Normal
-0.1
186
Normal
-0.1
196
Normal
-0.1
434
Normal
-0.1
258
Normal
-0.1
126
Normal
-0.1
488
Normal
-0.1
858
Normal
-0.1
922
Normal
-0.1
534
Normal
-0.1
132
Normal
-0.1
778
Normal
-0.1
862
Normal
-0.1
921
Tumor
-0.1
866
Normal
-0.1
396
Normal
-0.1
563
Tumor
-0.1
341
Tumor
-0.1
392
Normal
-0.1
813
Tumor
-0.1
538
Normal
-0.1
1045
Tumor
-0.1
662
Normal
-0.1
464
Normal
-0.1
868
Normal
-0.2
686
Normal
-0.2
148
Normal
-0.2
698
Normal
-0.2
172
Normal
-0.2
516
Normal
-0.2
384
Normal
-0.2
1042
Normal
-0.2
388
Normal
-0.2
362
Normal
-0.2
361
Tumor
-0.2
738
Normal
-0.2
188
Normal
-0.2
483
Tumor
-0.2
223
Tumor
-0.2
354
Normal
-0.2
278
Normal
-0.2
665
Tumor
-0.2
618
Normal
-0.2
695
Tumor
-0.2
214
Normal
-0.2
416
Normal
-0.2
268
Normal
-0.2
874
Normal
-0.2
455
Tumor
-0.2
424
Normal
-0.2
466
Normal
-0.2
364
Normal
-0.2
452
Normal
-0.2
746
Normal
-0.2
1044
Normal
-0.2
366
Normal
-0.2
162
Normal
-0.2
478
Normal
-0.2
146
Normal
-0.2
342
Normal
-0.2
641
Tumor
-0.2
722
Normal
-0.2
332
Normal
-0.2
924
Normal
-0.2
742
Normal
-0.2
343
Tumor
-0.2
714
Normal
-0.2
723
Tumor
-0.2
394
Normal
-0.2
743
Tumor
-0.2
445
Tumor
-0.2
386
Normal
-0.2
741
Tumor
-0.2
376
Normal
-0.2
426
Normal
-0.2
672
Normal
-0.3
192
Normal
-0.3
344
Normal
-0.3
666
Normal
-0.3
642
Normal
-0.3
456
Normal
-0.3
357
Tumor
-0.3
314
Normal
-0.3
818
Normal
-0.3
744
Normal
-0.3
298
Normal
-0.4
615
Tumor
-0.4
358
Normal
-0.4
517
Tumor
-0.4
616
Normal
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
