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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTFR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
72.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
41.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
34.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
31.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
29.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
22.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
20.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
14.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
13.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTFR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.2
Number of samples
231
Samples
Sample
Description
TPM
DO45247
0 years, female, NA, stage:2, alive, 210 days
71.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
61.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
59.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
58.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
53.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
51.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
42.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
41.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
41.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
39.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
34.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
33.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
29.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
29.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
24.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.9
715
Tumor
1.5
231
Tumor
1.4
641
Tumor
1.4
745
Tumor
1.3
267
Tumor
1.2
473
Tumor
1.1
967
Tumor
1.1
1025
Tumor
1.0
537
Tumor
0.9
1041
Tumor
0.9
865
Tumor
0.9
145
Tumor
0.8
147
Tumor
0.8
285
Tumor
0.8
112
Tumor
0.8
937
Tumor
0.8
477
Tumor
0.7
127
Tumor
0.6
533
Tumor
0.6
525
Tumor
0.6
471
Tumor
0.6
435
Tumor
0.6
823
Tumor
0.5
925
Tumor
0.5
915
Tumor
0.5
567
Tumor
0.5
965
Tumor
0.5
873
Tumor
0.5
851
Tumor
0.4
1031
Tumor
0.4
1043
Tumor
0.4
187
Tumor
0.4
755
Tumor
0.4
697
Tumor
0.4
635
Tumor
0.4
517
Tumor
0.4
553
Tumor
0.4
981
Tumor
0.4
857
Tumor
0.3
483
Tumor
0.3
685
Tumor
0.3
975
Tumor
0.3
523
Tumor
0.3
171
Tumor
0.3
421
Tumor
0.3
497
Tumor
0.3
221
Tumor
0.3
487
Tumor
0.3
921
Tumor
0.3
327
Tumor
0.3
443
Tumor
0.3
161
Tumor
0.3
135
Tumor
0.3
413
Tumor
0.3
185
Tumor
0.3
663
Tumor
0.3
515
Tumor
0.3
363
Tumor
0.3
1013
Tumor
0.2
861
Tumor
0.2
223
Tumor
0.2
957
Tumor
0.2
817
Tumor
0.2
671
Tumor
0.2
257
Tumor
0.2
423
Tumor
0.2
617
Tumor
0.2
277
Tumor
0.1
484
Normal
0.1
513
Tumor
0.1
884
Normal
0.1
867
Tumor
0.1
361
Tumor
0.1
191
Tumor
0.1
665
Tumor
0.1
746
Normal
0.1
877
Tumor
0.1
883
Tumor
0.1
1032
Normal
0.1
944
Normal
0.1
1026
Normal
0.1
526
Normal
0.1
963
Tumor
0.0
923
Tumor
0.0
341
Tumor
0.0
868
Normal
0.0
743
Tumor
0.0
427
Tumor
0.0
696
Normal
0.0
367
Tumor
0.0
465
Tumor
0.0
824
Normal
0.0
467
Tumor
0.0
474
Normal
0.0
271
Tumor
0.0
393
Tumor
0.0
881
Tumor
0.0
698
Normal
0.0
866
Normal
0.0
448
Normal
0.0
546
Normal
0.0
353
Tumor
0.0
955
Tumor
0.0
132
Normal
0.0
411
Tumor
0.0
813
Tumor
0.0
375
Tumor
0.0
481
Tumor
0.0
433
Tumor
0.0
113
Tumor
0.0
571
Tumor
0.0
462
Normal
0.0
1042
Normal
0.0
445
Tumor
0.0
518
Normal
0.0
1046
Normal
-0.1
472
Normal
-0.1
862
Normal
-0.1
983
Tumor
-0.1
482
Normal
-0.1
355
Tumor
-0.1
727
Tumor
-0.1
436
Normal
-0.1
514
Normal
-0.1
385
Tumor
-0.1
534
Normal
-0.1
142
Normal
-0.1
451
Tumor
-0.1
912
Normal
-0.1
924
Normal
-0.1
1045
Tumor
-0.1
628
Normal
-0.1
858
Normal
-0.1
131
Tumor
-0.1
964
Normal
-0.1
1022
Normal
-0.1
815
Tumor
-0.1
545
Tumor
-0.1
415
Tumor
-0.1
1016
Normal
-0.1
554
Normal
-0.1
222
Normal
-0.1
488
Normal
-0.1
864
Normal
-0.1
616
Normal
-0.1
1028
Normal
-0.1
922
Normal
-0.1
926
Normal
-0.1
466
Normal
-0.1
648
Normal
-0.2
952
Normal
-0.2
416
Normal
-0.2
141
Tumor
-0.2
615
Tumor
-0.2
786
Normal
-0.2
818
Normal
-0.2
494
Normal
-0.2
816
Normal
-0.2
123
Tumor
-0.2
391
Tumor
-0.2
516
Normal
-0.2
228
Normal
-0.2
1027
Tumor
-0.2
874
Normal
-0.2
664
Normal
-0.2
686
Normal
-0.2
618
Normal
-0.2
714
Normal
-0.2
137
Tumor
-0.2
331
Tumor
-0.2
396
Normal
-0.2
136
Normal
-0.2
716
Normal
-0.2
464
Normal
-0.2
728
Normal
-0.2
966
Normal
-0.2
636
Normal
-0.2
814
Normal
-0.2
217
Tumor
-0.2
724
Normal
-0.2
722
Normal
-0.2
426
Normal
-0.2
878
Normal
-0.2
721
Tumor
-0.2
785
Tumor
-0.3
212
Normal
-0.3
882
Normal
-0.3
914
Normal
-0.3
742
Normal
-0.3
463
Tumor
-0.3
368
Normal
-0.3
286
Normal
-0.3
568
Normal
-0.3
428
Normal
-0.3
956
Normal
-0.3
642
Normal
-0.3
968
Normal
-0.3
452
Normal
-0.3
564
Normal
-0.3
744
Normal
-0.3
162
Normal
-0.3
195
Tumor
-0.3
218
Normal
-0.3
958
Normal
-0.3
138
Normal
-0.3
1044
Normal
-0.3
938
Normal
-0.3
196
Normal
-0.3
756
Normal
-0.3
528
Normal
-0.3
278
Normal
-0.3
232
Normal
-0.3
778
Normal
-0.3
953
Tumor
-0.3
723
Tumor
-0.3
572
Normal
-0.3
424
Normal
-0.3
283
Tumor
-0.3
376
Normal
-0.3
214
Normal
-0.3
863
Tumor
-0.3
535
Tumor
-0.3
358
Normal
-0.3
1014
Normal
-0.3
982
Normal
-0.3
395
Tumor
-0.4
172
Normal
-0.4
492
Normal
-0.4
977
Tumor
-0.4
422
Normal
-0.4
918
Normal
-0.4
111
Normal
-0.4
186
Normal
-0.4
461
Tumor
-0.4
951
Tumor
-0.4
498
Normal
-0.4
258
Normal
-0.4
148
Normal
-0.4
738
Normal
-0.4
412
Normal
-0.4
446
Normal
-0.4
662
Normal
-0.4
312
Normal
-0.4
262
Normal
-0.4
342
Normal
-0.4
328
Normal
-0.4
284
Normal
-0.4
737
Tumor
-0.4
128
Normal
-0.4
1015
Tumor
-0.4
224
Normal
-0.4
478
Normal
-0.4
627
Tumor
-0.4
984
Normal
-0.4
114
Normal
-0.4
365
Tumor
-0.4
414
Normal
-0.4
343
Tumor
-0.4
394
Normal
-0.4
852
Normal
-0.4
364
Normal
-0.5
272
Normal
-0.5
468
Normal
-0.5
392
Normal
-0.5
954
Normal
-0.5
916
Normal
-0.5
357
Tumor
-0.5
146
Normal
-0.5
387
Tumor
-0.5
344
Normal
-0.5
913
Tumor
-0.5
456
Normal
-0.5
356
Normal
-0.5
647
Tumor
-0.5
574
Normal
-0.5
538
Normal
-0.5
976
Normal
-0.5
352
Normal
-0.5
268
Normal
-0.5
192
Normal
-0.5
666
Normal
-0.5
354
Normal
-0.5
573
Tumor
-0.6
1021
Tumor
-0.6
493
Tumor
-0.6
227
Tumor
-0.6
536
Normal
-0.6
672
Normal
-0.6
695
Tumor
-0.6
558
Normal
-0.6
362
Normal
-0.6
188
Normal
-0.6
298
Normal
-0.6
527
Tumor
-0.6
524
Normal
-0.6
261
Tumor
-0.6
388
Normal
-0.6
447
Tumor
-0.6
434
Normal
-0.6
432
Normal
-0.6
124
Normal
-0.7
297
Tumor
-0.7
713
Tumor
-0.7
366
Normal
-0.7
313
Tumor
-0.7
213
Tumor
-0.7
444
Normal
-0.7
211
Tumor
-0.8
383
Tumor
-0.8
455
Tumor
-0.8
384
Normal
-0.8
126
Normal
-0.8
491
Tumor
-0.8
978
Normal
-0.8
563
Tumor
-0.8
917
Tumor
-0.8
943
Tumor
-0.9
741
Tumor
-0.9
351
Tumor
-0.9
386
Normal
-0.9
314
Normal
-0.9
431
Tumor
-1.0
332
Normal
-1.0
777
Tumor
-1.0
125
Tumor
-1.1
661
Tumor
-1.1
425
Tumor
-1.1
911
Tumor
-1.2
311
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
